Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G42690 517 / 0 alpha/beta-Hydrolases superfamily protein (.1) AT4G18550 304 / 3e-100 AtDSEL Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) AT2G31100 293 / 8e-96 alpha/beta-Hydrolases superfamily protein (.1) AT1G06250 281 / 6e-91 alpha/beta-Hydrolases superfamily protein (.1) AT1G51440 263 / 5e-83 alpha/beta-Hydrolases superfamily protein (.1) AT1G06800 260 / 5e-82 PLA-I{gamma}1 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) AT2G30550 251 / 2e-78 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G30370 227 / 6e-69 DLAH DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) AT1G05800 199 / 5e-59 DGL DONGLE, alpha/beta-Hydrolases superfamily protein (.1) AT2G31690 197 / 6e-58 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041967 [exp] 719 / 0 AT2G42690 490 / 3e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10017668 [exp] 298 / 1e-97 AT4G18550 420 / 1e-145 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013932 [exp] 284 / 8e-93 AT4G18550 427 / 5e-149 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10000985 [exp] 252 / 3e-81 AT4G18550 375 / 1e-129 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013936 [exp] 245 / 1e-77 AT4G18550 345 / 2e-116 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10013935 [exp] 229 / 3e-71 AT4G18550 337 / 2e-113 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038524 [exp] 215 / 1e-65 AT1G30370 526 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10015521 [exp] 213 / 2e-64 AT1G30370 524 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1) Lus10038526 [exp] 206 / 1e-60 AT1G30370 539 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G101800 [exp] 568 / 0 AT2G42690 531 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G064400 [exp] 338 / 2e-113 AT4G18550 501 / 3e-177 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054800 [exp] 337 / 2e-113 AT4G18550 516 / 0.0 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G051900 [exp] 276 / 5e-88 AT1G51440 700 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.004G054600 [exp] 261 / 1e-83 AT4G18550 384 / 1e-131 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.005G218500 [exp] 261 / 4e-82 AT1G06800 652 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.002G044700 [exp] 258 / 3e-81 AT1G06800 662 / 0.0 phospholipase A I gamma 1, alpha/beta-Hydrolases superfamily protein (.1.2) Potri.015G026400 [exp] 236 / 1e-73 AT4G18550 330 / 5e-110 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.015G026500 [exp] 221 / 2e-68 AT4G18550 326 / 5e-109 Arabidopsis thaliana DAD1-like seeding establishment-related lipase, alpha/beta-Hydrolases superfamily protein (.1) Potri.009G057900 [exp] 223 / 1e-67 AT1G30370 626 / 0.0 DAD1-like acylhydrolase, alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF01764 [flax] [poplar] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Lus10017975 pacid=23147912 polypeptide=Lus10017975 locus=Lus10017975.g ID=Lus10017975.BGIv1.0 annot-version=v1.0 ATGGAATCTTCCACCTCTGACGAGCCAGCGTGGTCGGAGATACTAGGCAGCAACTCCTGGAACAACCTCCTCGACCCTCTCAATCTCACCCTCCGCCACC TCATCCTCCGGTGCGGCGACTTCTGCCAGGCCACCTACGACGCCTTCAACAACGACTCCAATTCCAGGTTCGCCGGCGCCAGCCGCTATGGCAAGTCCAA CTTCTTCCACAAGGTCATGCTCCAAGACCCCGACAACTACCGAGTATGCGCGTTCCTGTACGCCACCGCCAGAGTGAGCGTTCCGGCAGCATTCCTTCTC CACTCCCTCGCCCGCGAGGACGACACTTGGGACCGCGAATCAAACTGGATCGGCTACGTCGCCGTCACCTCCGATGAACAGGCCGCAGCCCTCGGCCGCC GCGAGATCTACGTCGCGTTCCGCGGCACCAGCAGGAACTACGAGTGGGTCAACCTCCTCGGCGCCCAGCTCACCTCTGCTCGTGAACTGCTCAAAACCAC CGACGCATCCGCCGCTGATCCCAAAGTGATGCTGGGCTGGCTGACGATGTACGTCTCCGACGAGCCGAGCTCCCCATTTACGAAACAGAGCGCCAGATCC CAGCTCCTTGCGGCCATCAACCGCCTCCGTGAGAAGTATGCCGGTGAGGAACTTAGCGTAATTCTGACCGGGCACAGTCTGGGGGCTTGCCTGGCAATCT TAGCGGCATTCGACATTGCCGAAAACGGGGCCGTTGGGGTGGAAACCCCAGTGACGGCGATCGTGTTCGGGAGCCCAATGGTCGGAAACAGAGCATTCCA CGACAGAGTGAAAACCCACCGGAATCTGAGAATCCTCCACGTACGGAACAAGATCGACCTGCTTACTCACTACCCAGGGAAGTTGCTAGGGTATGTGGAC CCGGGGACAAAGGAGCTAGTGATCGACACGAGAAAGTCGCCCAACCTGAAGCGGTCGACGAATACAGGGGATTGGCACAATCTGCAGGGTATGCTGCACG TGGTCGCGGGATGGAACGGTGAAGATGGGGAGTTCGAGATGAAAGTGAAGAGGAGCTTGGCTTTGGTGAACAAGTCGAGTGAGTTCTTGAAGGAGGAGTA TTTGGTGCCTGGTTCTTGGTGGGTGGAGAAGAACAAAGGGATGGTTAGGGATGAAGATGGAGGGTGGGCTCTGGCTCCTCCTGATGATGAAGATCTCCCC GTTCCTCCCGAGGACGACGATGATCTATAG
AA sequence Show only first row Show all	>Lus10017975 pacid=23147912 polypeptide=Lus10017975 locus=Lus10017975.g ID=Lus10017975.BGIv1.0 annot-version=v1.0 MESSTSDEPAWSEILGSNSWNNLLDPLNLTLRHLILRCGDFCQATYDAFNNDSNSRFAGASRYGKSNFFHKVMLQDPDNYRVCAFLYATARVSVPAAFLL HSLAREDDTWDRESNWIGYVAVTSDEQAAALGRREIYVAFRGTSRNYEWVNLLGAQLTSARELLKTTDASAADPKVMLGWLTMYVSDEPSSPFTKQSARS QLLAAINRLREKYAGEELSVILTGHSLGACLAILAAFDIAENGAVGVETPVTAIVFGSPMVGNRAFHDRVKTHRNLRILHVRNKIDLLTHYPGKLLGYVD PGTKELVIDTRKSPNLKRSTNTGDWHNLQGMLHVVAGWNGEDGEFEMKVKRSLALVNKSSEFLKEEYLVPGSWWVEKNKGMVRDEDGGWALAPPDDEDLP VPPEDDDDL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10017975 [exp]	0	1
AT2G42690			alpha/beta-Hydrolases superfam...		Lus10041967 [exp]	1.0	0.9055
AT5G15080			Protein kinase superfamily pro...		Lus10038087 [exp]	3.2	0.8995
AT5G47610			RING/U-box superfamily protein...		Lus10025563 [exp]	3.5	0.8618
AT3G11590			unknown protein		Lus10021324 [exp]	6.2	0.8403
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10000643 [exp]	9.3	0.8142
AT4G20270		BAM3	BARELY ANY MERISTEM 3, Leucine...		Lus10036242 [exp]	9.3	0.8675
AT3G55370	DOF	OBP3, AtDof3. 6	OBF-binding protein 3 (.1.2.3)		Lus10005956 [exp]	12.2	0.8642
AT5G39420		CDC2CAT	CDC2C (.1)		Lus10030692 [exp]	13.9	0.8526
AT1G67720			Leucine-rich repeat protein ki...		Lus10037051 [exp]	14.0	0.8608
AT5G44005			unknown protein		Lus10003609 [exp]	14.7	0.8294

Compare expression of checked genes

Lus10017975 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.