Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39130 48 / 4e-07 Dehydrin family protein (.1) AT2G21490 48 / 6e-07 LEA dehydrin LEA (.1) AT5G66400 39 / 0.0008 ATDI8, RAB18 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041969 [exp] 246 / 6e-83 AT5G66400 66 / 2e-13 RESPONSIVE TO ABA 18, ARABIDOPSIS THALIANA DROUGHT-INDUCED 8, Dehydrin family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158500 [exp] 58 / 9e-11 AT2G21490 56 / 3e-10 dehydrin LEA (.1) Potri.009G120100 [exp] 54 / 6e-09 AT4G39130 52 / 1e-08 Dehydrin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00257 [flax] [poplar] Dehydrin Dehydrin
Representative CDS sequence Show only first row Show all	>Lus10017977 pacid=23147967 polypeptide=Lus10017977 locus=Lus10017977.g ID=Lus10017977.BGIv1.0 annot-version=v1.0 ATGGCGGAACTGAGAGACGAGTACGGAAACAGAGTGGAGCTGACCGACGAACTGGGAAAACCAGTTGAGCTGAGAGACGAGCACGGCAACCCAGTTCACA TCAAAGGCGTGGCCATCCCGGCCGACGACGCAACCATTGCAGAGGCGCCGCCGCATCTGGTGCCGCCGCTAGTGGGTGGAGAACGGAGAGAAAAGGACCC GCTGGACACAACACCCCATACTTTAGGAGAGGCCCTCAAGTCCGACCCCACAACCGAGACGGCTGATGTCAGCATAGCTGGACCTGCCGCCGCTGCTGGC ACTGGTACTGTTGGCTTGATAAGCACTACTGTTATCGAGATGAAAGAAAGTGGTTATACGCCCGAAATCCAGCGCTCTCCAAGCAGCACCAGCTCTTCTG GCACGTCGGAGGATGATGGGCAGGGAGGGAGGAGGAAGAAGAAAGGGCTGACTCAGAAAATCAAAGAGAAACTCTCTGGGAAGCACAACAAGCACGGTCA GAGTCATGACCCTGCAGCAGCTGCAGCTTATCCGCCGGGTACTGCTGCTGGATCGACGGCTGTGGCGCCTGAACATGAGAAGAAGAGCGTGTTTGAGAAA ATCAAGGACAAATTGCCTGGACATGGCCATGGCGGCCACCACAACAATCACTAG
AA sequence Show only first row Show all	>Lus10017977 pacid=23147967 polypeptide=Lus10017977 locus=Lus10017977.g ID=Lus10017977.BGIv1.0 annot-version=v1.0 MAELRDEYGNRVELTDELGKPVELRDEHGNPVHIKGVAIPADDATIAEAPPHLVPPLVGGERREKDPLDTTPHTLGEALKSDPTTETADVSIAGPAAAAG TGTVGLISTTVIEMKESGYTPEIQRSPSSTSSSGTSEDDGQGGRRKKKGLTQKIKEKLSGKHNKHGQSHDPAAAAAYPPGTAAGSTAVAPEHEKKSVFEK IKDKLPGHGHGGHHNNH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G66400		ATDI8, RAB18	RESPONSIVE TO ABA 18, ARABIDOP...		Lus10017977 [exp]	0	1
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10033380 [exp]	1.7	0.9374
AT4G15248	CO		B-box type zinc finger family ...		Lus10027151 [exp]	4.0	0.9056
					Lus10013471 [exp]	7.3	0.8500
					Lus10021347 [exp]	7.7	0.8619
AT5G62140			unknown protein		Lus10015008 [exp]	8.1	0.8937
AT5G46800		BOU	A BOUT DE SOUFFLE, Mitochondri...		Lus10000906 [exp]	9.7	0.8829
AT4G14690		ELIP2	EARLY LIGHT-INDUCIBLE PROTEIN ...		Lus10039379 [exp]	9.8	0.8786
AT3G21150	CO	EIP6, BBX32	EMF1-Interacting Protein 1, B-...		Lus10034830 [exp]	9.9	0.8619
AT1G45688			unknown protein		Lus10025793 [exp]	12.0	0.8673
AT2G30100			pentatricopeptide (PPR) repeat...		Lus10042274 [exp]	15.7	0.8674

Compare expression of checked genes

Lus10017977 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.