Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39140 252 / 3e-79 RING/U-box superfamily protein (.1.2.3.4.5) AT2G21500 234 / 2e-72 RING/U-box superfamily protein (.1.2) AT1G75400 175 / 9e-50 RING/U-box superfamily protein (.1) AT1G19680 171 / 3e-48 RING/U-box superfamily protein (.1) AT5G18260 79 / 5e-16 RING/U-box superfamily protein (.1) AT1G14180 78 / 2e-15 RING/U-box superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041970 [exp] 707 / 0 AT4G39140 316 / 3e-104 RING/U-box superfamily protein (.1.2.3.4.5) Lus10020256 [exp] 72 / 2e-13 AT5G18260 124 / 4e-32 RING/U-box superfamily protein (.1) Lus10008046 [exp] 69 / 3e-13 AT4G39140 65 / 4e-12 RING/U-box superfamily protein (.1.2.3.4.5) Lus10002639 [exp] 72 / 6e-13 AT3G56690 1001 / 0.0 Cam interacting protein 111 (.1) Lus10036764 [exp] 66 / 1e-11 AT1G14180 134 / 2e-37 RING/U-box superfamily protein (.1.2) Lus10037162 [exp] 58 / 1e-08 AT1G69523 268 / 4e-84 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G158400 [exp] 417 / 2e-143 AT4G39140 352 / 2e-118 RING/U-box superfamily protein (.1.2.3.4.5) Potri.009G120000 [exp] 408 / 3e-140 AT4G39140 340 / 2e-113 RING/U-box superfamily protein (.1.2.3.4.5) Potri.005G231500 [exp] 241 / 5e-75 AT1G75400 337 / 5e-112 RING/U-box superfamily protein (.1) Potri.002G031600 [exp] 236 / 3e-73 AT1G75400 329 / 7e-109 RING/U-box superfamily protein (.1) Potri.013G060900 [exp] 81 / 2e-16 AT5G18260 123 / 9e-32 RING/U-box superfamily protein (.1) Potri.019G032300 [exp] 76 / 1e-14 AT5G18260 122 / 2e-31 RING/U-box superfamily protein (.1) Potri.018G119600 [exp] 69 / 4e-13 AT1G75400 63 / 2e-11 RING/U-box superfamily protein (.1) Potri.006G063100 [exp] 66 / 4e-12 AT4G39140 65 / 7e-12 RING/U-box superfamily protein (.1.2.3.4.5) Potri.006G180600 [exp] 48 / 1e-05 AT5G18260 52 / 4e-07 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10017978 pacid=23147954 polypeptide=Lus10017978 locus=Lus10017978.g ID=Lus10017978.BGIv1.0 annot-version=v1.0 ATGGGAGGCGCTTGTTGCATTGCTGCTAGAGACAAAAGTATTGTGCATGGACCTGGAAGTGATATATTACACAGGAATATTCGGCATTCACCATCATGGA GCTTTAGGTGGGATAACAGGGGCCGGGTGGCTGGGGAAGACACTTCCATAAGCTGGTTCTCTAATGGAACAAGTGTAAATGATGAATCAGCTGCGAAATA TGGATCAGCATATGCATCAGAAGATGGGAGCCCATCATTTAGTGCTGGGAGGAATACATTGCAGAAGTCTCCTGTGTCTGACAGAACTATAGGCCATGTG ACAACTCCTGCATCAGAGCAATCCATTTCAAGAAATGCATCCATGGAGACAAATCTGGAACAGCAAACTGAACAATCACTGTCAGCTTCATATCAGTCCA CCTCCAAATTATCGCTCTCATTGCCTTCAACTTCATCGCTGCCAGCCTCTCCTCTGTCGACTCAAAGCCAATTGCTTCCGTCCAGCTCAACCAGGCCACC ATGGCCCTGCCATTCCCCAGGACATCACTCAGCTGGGCAAGCTTCAGACTGCAAAAATCCAGGATTGAAGCAACCTTCAAATGGCTTCACAGGTGGCGAA GACAGGTCTACGCCCCCCTCATGGAGCAACGAATCTACTCGAGGATCCCATGGAGGATCTTCCGACGGTTGGTCGATGCTTGCATTTTCTGAACTTATGG CCACATCTCAGAGAGAAGGGTGGTCCTTCGACACCGACTCATTCGGTTCCCATCCCACGAAAACCAGAGGGAACAGTCAAGTATCTGCTTCTTCCTCCAT GGATCTACAAGCTTGCGGAATCTGCTTGAAGCTCCTGACGGATAGATCCTTGTGGAGTGCCCAGAAACTCGTCGCTAATAACGAGCTACCCGTGGTTGCG ATTCTAACATGCGGCCATGTTTACCATGCCGAATGCCTAGAGACACTGACACATGAAATCGCCAAGTACGACCCTTCTTGCCCAATATGTACACTGGGGG TGAAACAGACCCTTAAGTTGTCTCAGAAAGCCATGAAAGCAGAAATGGAAATGAAGGCCAGGAGGAAGAAATCCAGGAAGCGGGTGGTGGATAGTGATGT TGATGGTGGTGGTGATTCCTCAAGGAGCGATAATGTAGTGAAACCTGGGCGTGAAGGGAAGGGTCCTAAGTTAGGTTCCAGTTCCAGCATGAAAAGCCCT TCATCGAAAGCTTTCCTGAAGAAGCATTTTGCGTTTGGATCGAAGGCCAGTAGATCACTGTCCGAGAACCATGCCAAAAGGAAAGGCTTCTTCTGGAGCA GATCAATGAAGGGATGA
AA sequence Show only first row Show all	>Lus10017978 pacid=23147954 polypeptide=Lus10017978 locus=Lus10017978.g ID=Lus10017978.BGIv1.0 annot-version=v1.0 MGGACCIAARDKSIVHGPGSDILHRNIRHSPSWSFRWDNRGRVAGEDTSISWFSNGTSVNDESAAKYGSAYASEDGSPSFSAGRNTLQKSPVSDRTIGHV TTPASEQSISRNASMETNLEQQTEQSLSASYQSTSKLSLSLPSTSSLPASPLSTQSQLLPSSSTRPPWPCHSPGHHSAGQASDCKNPGLKQPSNGFTGGE DRSTPPSWSNESTRGSHGGSSDGWSMLAFSELMATSQREGWSFDTDSFGSHPTKTRGNSQVSASSSMDLQACGICLKLLTDRSLWSAQKLVANNELPVVA ILTCGHVYHAECLETLTHEIAKYDPSCPICTLGVKQTLKLSQKAMKAEMEMKARRKKSRKRVVDSDVDGGGDSSRSDNVVKPGREGKGPKLGSSSSMKSP SSKAFLKKHFAFGSKASRSLSENHAKRKGFFWSRSMKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39140			RING/U-box superfamily protein...		Lus10017978 [exp]	0	1
AT4G39140			RING/U-box superfamily protein...		Lus10041970 [exp]	1.0	0.9180
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10014176 [exp]	4.2	0.8350
AT5G51060		ATRBOHC, RHD2	ROOT HAIR DEFECTIVE 2, A. THAL...		Lus10016739 [exp]	4.5	0.8328
AT3G55530		SDIR1	SALT- AND DROUGHT-INDUCED RING...		Lus10000513 [exp]	4.6	0.8217
AT1G61560		ATMLO6, MLO6	MILDEW RESISTANCE LOCUS O 6, S...		Lus10041410 [exp]	4.7	0.8137
AT1G16270			Protein kinase superfamily pro...		Lus10031749 [exp]	4.9	0.8338
AT4G17170		ATRAB-B1B, AT-R...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10038744 [exp]	7.7	0.8431
AT5G42080		RSW9, DRP1A, AG...	RADIAL SWELLING 9, DYNAMIN-REL...		Lus10023073 [exp]	9.0	0.8148
AT1G08320	bZIP	TGA9, bZIP21	TGACG \(TGA\) motif-binding pr...		Lus10019543 [exp]	10.2	0.8004
AT2G02040		NTR1, ATPTR2-B	NITRATE TRANSPORTER 1, ARABIDO...		Lus10040099 [exp]	11.2	0.8294

Compare expression of checked genes

Lus10017978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.