Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G39150 481 / 9e-172 DNAJ heat shock N-terminal domain-containing protein (.1.2) AT2G21510 454 / 5e-161 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G76700 295 / 6e-98 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G77020 294 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G21080 292 / 9e-97 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G22060 61 / 4e-10 ATJ2 ARABIDOPSIS THALIANA DNAJ HOMOLOGUE 2, DNAJ homologue 2 (.1) AT3G62600 58 / 2e-09 ATERDJ3B DNAJ heat shock family protein (.1) AT3G17830 57 / 6e-09 Molecular chaperone Hsp40/DnaJ family protein (.1) AT2G22360 57 / 9e-09 DNAJ heat shock family protein (.1) AT1G59725 56 / 1e-08 DNAJ heat shock family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041972 [exp] 620 / 0 AT4G39150 534 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10028809 [exp] 549 / 0 AT4G39150 517 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10017472 [exp] 545 / 0 AT4G39150 519 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Lus10013198 [exp] 301 / 7e-100 AT1G21080 580 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10030713 [exp] 295 / 2e-96 AT1G21080 573 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Lus10042774 [exp] 280 / 5e-92 AT1G77020 497 / 1e-176 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10029744 [exp] 249 / 6e-80 AT1G77020 452 / 6e-159 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10013981 [exp] 62 / 2e-10 AT2G20560 488 / 8e-175 DNAJ heat shock family protein (.1) Lus10000631 [exp] 58 / 4e-09 AT2G22360 672 / 0.0 DNAJ heat shock family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G119800 [exp] 462 / 1e-164 AT4G39150 511 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.004G158300 [exp] 425 / 6e-150 AT4G39150 469 / 2e-167 DNAJ heat shock N-terminal domain-containing protein (.1.2) Potri.005G260400 [exp] 313 / 1e-104 AT1G21080 585 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G000300 [exp] 308 / 9e-103 AT1G21080 602 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.002G074600 [exp] 286 / 1e-94 AT1G77020 593 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G185800 [exp] 279 / 1e-91 AT1G77020 582 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.018G034600 [exp] 61 / 4e-10 AT5G25530 410 / 8e-144 DNAJ heat shock family protein (.1) Potri.010G243100 [exp] 57 / 6e-09 AT3G44110 528 / 0.0 DNAJ homologue 3 (.1.2) Potri.006G246700 [exp] 57 / 7e-09 AT5G25530 394 / 1e-137 DNAJ heat shock family protein (.1) Potri.002G198000 [exp] 56 / 9e-09 AT3G62600 551 / 0.0 DNAJ heat shock family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [flax] [poplar] Chaperone-J PF00226 [flax] [poplar] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Lus10017980 pacid=23147900 polypeptide=Lus10017980 locus=Lus10017980.g ID=Lus10017980.BGIv1.0 annot-version=v1.0 ATGGTGAAAGAGACGGATTATTACGACATTTTGGATGTCAATGTCGACGCCACAGCAGCTGATATCAAGAAGGCTTACTACATCAAGGCAAGAACAGTTC ATCCTGATAAAAACCATGGTGATCCAAAGGCCGCAGAAAATTTCCAGAAACTTGGAGAGGCATATCAGGTGTTAAGCGATCCGGAGAAACGCGAAGCTTA TGACAAGCATGGCAAGGATGGAGTACGACAGGATGCCATGGTTGACCCTGCAGCTGTATTTGGTATGCTATTCGGCAGCGAGTACTTTGAAGATTACATT GGTCAGCTTGCTTTGGCATCAATATCAACTATTGAAGTTGAAGAGAACAATCTCGATCCCGAAGCTCACAAGCAAAAGTTTCAGGAGAAGATAAAGGCTA TGCAAAAGGATAGGGAAGAAAAACTTATCACAAAGCTCAAAATCCACCTCGAGCCGTTTGTTGAAGGACGGGTGGATGAGTTCGTCAAGTGGGCGAATTC CGAGGCAAAACGGCTCTCCGAAGCTGCATTTGGTGAAGCAATGCTGCACACAATCGGCTATATCTATACTCGTAAAGCTGCTAGGGAGATTGGGAAGGAC AATCGATACATGAGAGTGCCGTTTTTAGCAGAGTGGGTACGAGATAAAGGTCACCAAATGAAATCGCAAGTAATGGCGGCTTCAGGTGCTGTCTCTTTAA TTCAAATACAGGAGGAACTGACGAAACTGAACCAAGCAGAGAACAAAGAAGAGAACTTGATGAAAGCTGTTGAGGACAGGAAGGATGCTATGCTTCAGTC ACTTTGGCAGATCAACGTGGTCGACATCGAGACTACTTTATCGTGCGTTTGTCAAGCTGTACTTAAAGACCCTACTGCGTCGAAAGATGTCCTGCGACTG CGAGCCAAAGGACTGAAGAAGCTTGGAACAGTCTTCCAAGGTGCGAAAGCGGCTTACTGCAGGGAAAACAGCCTGCGCCACGAGAGTAGCTTGGTCGATC CCGCTGCAAACTCTCGCCCGGTCTGA
AA sequence Show only first row Show all	>Lus10017980 pacid=23147900 polypeptide=Lus10017980 locus=Lus10017980.g ID=Lus10017980.BGIv1.0 annot-version=v1.0 MVKETDYYDILDVNVDATAADIKKAYYIKARTVHPDKNHGDPKAAENFQKLGEAYQVLSDPEKREAYDKHGKDGVRQDAMVDPAAVFGMLFGSEYFEDYI GQLALASISTIEVEENNLDPEAHKQKFQEKIKAMQKDREEKLITKLKIHLEPFVEGRVDEFVKWANSEAKRLSEAAFGEAMLHTIGYIYTRKAAREIGKD NRYMRVPFLAEWVRDKGHQMKSQVMAASGAVSLIQIQEELTKLNQAENKEENLMKAVEDRKDAMLQSLWQINVVDIETTLSCVCQAVLKDPTASKDVLRL RAKGLKKLGTVFQGAKAAYCRENSLRHESSLVDPAANSRPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10017980 [exp]	0	1
AT5G15920		EMB2782, SMC5	EMBRYO DEFECTIVE 2782, structu...		Lus10005338 [exp]	3.5	0.9543
AT4G23430		AtTic32-IVa	translocon at the inner envelo...		Lus10024685 [exp]	3.5	0.9528
AT1G21390		EMB2170	embryo defective 2170 (.1)		Lus10019210 [exp]	5.2	0.9370
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039478 [exp]	7.5	0.9558
AT5G19790	AP2_ERF	RAP2.11	related to AP2 11 (.1)		Lus10010652 [exp]	8.4	0.9461
AT1G11310		PMR2, ATMLO2, M...	POWDERY MILDEW RESISTANT 2, MI...		Lus10011630 [exp]	10.2	0.9330
AT3G44710			Plant protein of unknown funct...		Lus10020562 [exp]	10.4	0.9523
AT5G17840			DnaJ/Hsp40 cysteine-rich domai...		Lus10013632 [exp]	12.6	0.9418
AT1G48960			Adenine nucleotide alpha hydro...		Lus10027236 [exp]	14.0	0.9446
AT2G02850		ARPN	plantacyanin (.1)		Lus10022800 [exp]	14.1	0.9505

Compare expression of checked genes

Lus10017980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.