Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14590 303 / 1e-100 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 290 / 4e-95 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 271 / 2e-88 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 274 / 9e-86 unknown protein AT4G15970 258 / 2e-83 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 213 / 4e-66 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28695 207 / 7e-64 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28700 205 / 3e-63 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 160 / 4e-46 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G35610 57 / 8e-09 XEG113 xyloglucanase 113 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041973 [exp] 709 / 0 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 565 / 0 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 367 / 1e-125 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 360 / 1e-122 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041977 [exp] 317 / 5e-106 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041975 [exp] 307 / 5e-105 AT1G14590 196 / 1e-61 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 282 / 5e-93 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 276 / 3e-90 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 266 / 9e-88 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037300 [exp] 312 / 2e-104 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 297 / 7e-99 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 292 / 4e-96 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 282 / 1e-92 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.002G139800 [exp] 224 / 5e-70 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.012G112600 [exp] 221 / 1e-69 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 213 / 3e-65 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 207 / 4e-64 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G042700 [exp] 57 / 8e-09 AT1G19360 635 / 0.0 reduced residual arabinose 3, Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G186800 [exp] 54 / 1e-07 AT1G70630 668 / 0.0 Nucleotide-diphospho-sugar transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10017981 pacid=23147955 polypeptide=Lus10017981 locus=Lus10017981.g ID=Lus10017981.BGIv1.0 annot-version=v1.0 ATGGCGTCGACGGCAGGCGAAAAGCTTCACGTGATCAGAAAGGATGTCGACGCCGAGAGTTACCGCGGTACTACTAGCTCACTCCTCCGGCTGGAAATCT GCGCCGGCGTAGTTCTCGGTGTCATTTTGTGCTGCACGATCCTCTACGCGTCTTCCTACGCTTCTTCGCCGGAGTTTCTGCTCTCGTTTACTCCGGTCAG TCACAAATTACCGTCTCCGAGCAACAACACCACCGCTACCCACATCGACCCAGAGCTAATCGCGGTACTACGTAGAGCAACAACCGCACCACCAGAAGCA TCGCTAATACCAAATAAGACCGTGATCCTAGTGACGATAACCGAAGCCTTAGCGAGACCAGGGTCGATGCTCGACTTGTTCCTCGAGAGCTTTTGGGTCG GAAACGGGACCCAGGAACTACTCAGGCATTTGGTGATCGTGTCCCTTGACCACAAGGCTCACCAACGGTGCCAAGCCGTGCACCCACATTGCTACGAGAT GTCGTCGCCGAGTACGAAACAACTCAATAATTTGACTACGGATGCGTCGTTCATGACCCAAGAGTACTTGGTTGTCGTGTGGAGGAAGATTGAATTGGTC GCCTCCGTTTTACAACTCGGTTATGACTTGCTCCTCACGGATGCTGACATAATGTGGTTCAGAAACCCATTCCCGCACTTGGGGGTCGAACTGGCGGCTG ACATCCAAGTGGCGTGCGACGCATACCGAGGCAGCTCCTCCGATCCCAACACCGGATTCCTCTTCGTGAGAACGAACAACAGGACGATTCGGTTCCTAGA CCATTGGTACGAGTCGAGGGTCAAGTATCCTGGAAAGCACGATCAGGACGTGTTCAACCAAATCATCCGGTCGGACCAATTGGTCCACCAAATCGGACTG CGTATCCGATTTCTTGACACGGCTTACTTTGGCGGGTTTTGCGAACCGGTCAAGGACCTTAGCCTGGCAAACACCATGCACGCCAATTGCTGCGTGGGGA TGGGAACCAAGGTGCATGACCTCAGGAATGTGCTTAGGGATTGGAAACACTTCTCGTCGGCTGAGTCGGGGCAGAACTCGACTCGTTTCGATTGGAGACC GCCACGTGTACAGTGCGGCCGCTGGCAGTAG
AA sequence Show only first row Show all	>Lus10017981 pacid=23147955 polypeptide=Lus10017981 locus=Lus10017981.g ID=Lus10017981.BGIv1.0 annot-version=v1.0 MASTAGEKLHVIRKDVDAESYRGTTSSLLRLEICAGVVLGVILCCTILYASSYASSPEFLLSFTPVSHKLPSPSNNTTATHIDPELIAVLRRATTAPPEA SLIPNKTVILVTITEALARPGSMLDLFLESFWVGNGTQELLRHLVIVSLDHKAHQRCQAVHPHCYEMSSPSTKQLNNLTTDASFMTQEYLVVVWRKIELV ASVLQLGYDLLLTDADIMWFRNPFPHLGVELAADIQVACDAYRGSSSDPNTGFLFVRTNNRTIRFLDHWYESRVKYPGKHDQDVFNQIIRSDQLVHQIGL RIRFLDTAYFGGFCEPVKDLSLANTMHANCCVGMGTKVHDLRNVLRDWKHFSSAESGQNSTRFDWRPPRVQCGRWQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017981 [exp]	0	1
AT2G35980		NHL10, YLS9, AT...	YELLOW-LEAF-SPECIFIC GENE 9, A...		Lus10016962 [exp]	1.0	0.9955
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10029896 [exp]	1.4	0.9917
AT1G67070		PMI2, DIN9	PHOSPHOMANNOSE ISOMERASE 2, DA...		Lus10015062 [exp]	1.7	0.9916
AT4G36220		CYP84A1, FAH1, ...	ferulic acid 5-hydroxylase 1 (...		Lus10022303 [exp]	3.5	0.9883
AT3G07310			Protein of unknown function (D...		Lus10002342 [exp]	4.5	0.9887
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	5.3	0.9888
AT1G70420			Protein of unknown function (D...		Lus10030612 [exp]	5.9	0.9869
AT2G45220			Plant invertase/pectin methyle...		Lus10038917 [exp]	6.2	0.9849
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10007511 [exp]	7.4	0.9856
AT3G48180			unknown protein		Lus10043469 [exp]	7.5	0.9867

Compare expression of checked genes

Lus10017981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.