Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G14590 200 / 6e-60 Nucleotide-diphospho-sugar transferase family protein (.1) AT2G02061 186 / 1e-54 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G44820 181 / 8e-53 Nucleotide-diphospho-sugar transferase family protein (.1) AT4G19970 176 / 8e-49 unknown protein AT4G15970 155 / 2e-43 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28700 105 / 3e-25 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G28710 104 / 3e-25 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) AT1G28695 102 / 3e-24 Nucleotide-diphospho-sugar transferase family protein (.1) AT5G40900 61 / 4e-10 Nucleotide-diphospho-sugar transferase family protein (.1) AT1G75110 47 / 2e-05 RRA2 REDUCED RESIDUAL ARABINOSE 2, Nucleotide-diphospho-sugar transferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041977 [exp] 363 / 1e-123 AT1G14590 296 / 9e-98 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031927 [exp] 196 / 7e-60 AT1G14590 386 / 7e-135 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10017981 [exp] 199 / 8e-60 AT1G14590 303 / 9e-101 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041973 [exp] 192 / 3e-57 AT1G14590 302 / 3e-100 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031903 [exp] 193 / 4e-57 AT2G02061 361 / 1e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10031330 [exp] 191 / 2e-56 AT2G02061 359 / 4e-122 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10019139 [exp] 186 / 4e-55 AT1G14590 406 / 8e-142 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10041976 [exp] 185 / 3e-54 AT1G14590 292 / 4e-96 Nucleotide-diphospho-sugar transferase family protein (.1) Lus10034422 [exp] 184 / 3e-54 AT1G14590 411 / 2e-143 Nucleotide-diphospho-sugar transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037300 [exp] 201 / 1e-60 AT1G14590 404 / 1e-140 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.010G099400 [exp] 199 / 1e-59 AT1G14590 490 / 1e-173 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.015G029200 [exp] 194 / 4e-58 AT1G14590 405 / 8e-141 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.008G142200 [exp] 194 / 7e-58 AT1G14590 454 / 2e-160 Nucleotide-diphospho-sugar transferase family protein (.1) Potri.012G112600 [exp] 140 / 4e-38 AT1G28710 306 / 6e-104 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.015G110600 [exp] 128 / 1e-33 AT1G28710 300 / 2e-101 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.014G051600 [exp] 126 / 3e-32 AT1G28710 344 / 5e-117 Nucleotide-diphospho-sugar transferase family protein (.1.2.3) Potri.002G139800 [exp] 124 / 1e-31 AT1G28710 337 / 1e-114 Nucleotide-diphospho-sugar transferase family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [flax] [poplar] GT-A PF03407 [flax] [poplar] Nucleotid_trans Nucleotide-diphospho-sugar transferase
Representative CDS sequence Show only first row Show all	>Lus10017982 pacid=23147928 polypeptide=Lus10017982 locus=Lus10017982.g ID=Lus10017982.BGIv1.0 annot-version=v1.0 ATGTCGACGGAAAGCCGCGGCGGAGATCAGCGCCGTTGTCGTTTCCTCATGATCATCAGGTCGGAAATCTTGGCCGCCTTCCTTCTGGGTGTCGTATTGT GCTGCAGCGTCCTCTTCGCGTCTCTCTATTCTGCTTCTTCGCCTGAGTTACTGCTCTCCTTTTCTCCGGCCGGTCTTCCGAAGTCGTCACCGCCGCCGAA GACCAAACCCAAGAGCAACAACACCATCCTCGACGACCCAAAGCTAATCAGAGTACTCCAGAAAGCAACCAAAACAGCCACACCACAAGCACTATCACTG ATACCGAATAAAACAGTTATCCTAGTGACGGTAACCGAAGCCCTGGCGAGGGCGGTTTTCATATTAATCTTGGCCGGAAGTTCCTTCGACGGGGAGCTTC CCGGCGGAAGCAGCGGCAAAAATTCCAACTCCGGAGAATGCGGTCATTTACTCCGGCGGTTCAGCCTGGAAATCTTGGCAGTAGCCTTCTTTGTCGTTGG AGTGCTCTGCTTTCTTTCCCTCAACTACTACTCCTCCTCGTTCCCCTATAGTTCCTTCCGCCGTCTCTTCCCTAAGGCCACCTCGCCGGAAATCATTCCT CCGATTCCGGCGCCTCCTTCACTTTCGCCGGCAGCTATCTCTCCGGTCCCGGAGTCTCGCTTCATGGCCGGGGTGTACTTGAATATGATGTTGCGCCGCC TAGAGTTCTTGGGCTCCGTTTTGTGCTTGGGATTCGACTTTGCTTTCACGGATACAGACATCTTGTGGTTGAGGAACCCATTCCCACACTTCCACGTGGA CGCCGACTTCCAAGTCGCCGCCGACTTGTACAACGGCAACAGCTCCGACCTGAACAGCCTCCCGAGCTGTGGCTTCATGTTCTTCAGATCCAACGCCAGG ACCATCAGGTTCCACAAGATCTGGTACGAGACCAAGTTCAGATTCCCATTGGGAACCAATGAGCAAGACGGATTCAACAGAATCAAGTCGGACCCTTTCG TCCTCGACAAAATCGGGCTCCAGATTCGGTTTCTAGACACAGATTACTTCGGAGGCAACTGCTCACTGGTCAGGGACCTCAAGTTGGCATGCACCATGCA CGCCAATTGTATGGTCGGACTCGAAACCAAGCTGGATTACCTAAGGAAGGTTCTCGACGATTGGAATCATTTTACGAGTATTATTTCGCATGATGTCGAG TCCGTAAACTCCACTTCTTTCGACTGGATGCGACACTCGTGTGAGTCCGAACGAGTTGTGTGA
AA sequence Show only first row Show all	>Lus10017982 pacid=23147928 polypeptide=Lus10017982 locus=Lus10017982.g ID=Lus10017982.BGIv1.0 annot-version=v1.0 MSTESRGGDQRRCRFLMIIRSEILAAFLLGVVLCCSVLFASLYSASSPELLLSFSPAGLPKSSPPPKTKPKSNNTILDDPKLIRVLQKATKTATPQALSL IPNKTVILVTVTEALARAVFILILAGSSFDGELPGGSSGKNSNSGECGHLLRRFSLEILAVAFFVVGVLCFLSLNYYSSSFPYSSFRRLFPKATSPEIIP PIPAPPSLSPAAISPVPESRFMAGVYLNMMLRRLEFLGSVLCLGFDFAFTDTDILWLRNPFPHFHVDADFQVAADLYNGNSSDLNSLPSCGFMFFRSNAR TIRFHKIWYETKFRFPLGTNEQDGFNRIKSDPFVLDKIGLQIRFLDTDYFGGNCSLVRDLKLACTMHANCMVGLETKLDYLRKVLDDWNHFTSIISHDVE SVNSTSFDWMRHSCESERVV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G14590			Nucleotide-diphospho-sugar tra...		Lus10017982 [exp]	0	1
AT1G73890			Bifunctional inhibitor/lipid-t...		Lus10032488 [exp]	2.2	0.7743
AT1G32730			unknown protein		Lus10000258 [exp]	8.4	0.6727
AT4G35160			O-methyltransferase family pro...		Lus10032304 [exp]	13.5	0.6388
AT4G31115			Protein of unknown function (D...		Lus10018151 [exp]	13.9	0.6565
AT5G05340			Peroxidase superfamily protein...		Lus10025256 [exp]	16.0	0.6520
AT3G01190			Peroxidase superfamily protein...		Lus10006756 [exp]	21.4	0.6378
AT1G70710		CEL1 ,AtGH9B1	CELLULASE 1, glycosyl hydrolas...		Lus10027205 [exp]	22.2	0.6261
AT2G34740			Protein phosphatase 2C family ...		Lus10038455 [exp]	23.4	0.6109
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Lus10019185 [exp]	29.2	0.6128
AT4G03220			Protein with RNI-like/FBD-like...		Lus10027258 [exp]	32.5	0.6105

Compare expression of checked genes

Lus10017982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.