Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48410 1563 / 0 AGO1 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) AT5G43810 1389 / 0 PNH, ZLL, AGO10 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) AT2G27880 1043 / 0 AGO5 ARGONAUTE 5, Argonaute family protein (.1) AT1G69440 557 / 0 ZIP, AGO7 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) AT5G21150 511 / 3e-164 AGO9 ARGONAUTE 9, Argonaute family protein (.1) AT2G27040 502 / 2e-160 OCP11, AGO4 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) AT2G32940 457 / 3e-144 AGO6 ARGONAUTE 6, Argonaute family protein (.1) AT1G31280 461 / 4e-144 AGO2 argonaute 2, Argonaute family protein (.1) AT5G21030 437 / 6e-137 PAZ domain-containing protein / piwi domain-containing protein (.1) AT1G31290 422 / 5e-128 AGO3 ARGONAUTE 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041978 [exp] 1860 / 0 AT1G48410 1579 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031331 [exp] 1720 / 0 AT1G48410 1621 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10031904 [exp] 1584 / 0 AT1G48410 1481 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Lus10039386 [exp] 1407 / 0 AT5G43810 1647 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10006627 [exp] 1405 / 0 AT5G43810 1658 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Lus10014386 [exp] 723 / 0 AT2G27880 773 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Lus10036794 [exp] 613 / 0 AT1G69440 1251 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10037136 [exp] 611 / 0 AT1G69440 1267 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Lus10036795 [exp] 610 / 0 AT1G69440 1248 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G037100 [exp] 1654 / 0 AT1G48410 1560 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.015G029000 [exp] 1632 / 0 AT1G48410 1549 / 0.0 ARGONAUTE 1, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2.3) Potri.010G081300 [exp] 1409 / 0 AT5G43810 1663 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.008G158800 [exp] 1405 / 0 AT5G43810 1688 / 0.0 ZWILLE, PINHEAD, ARGONAUTE 10, Stabilizer of iron transporter SufD / Polynucleotidyl transferase (.1.2) Potri.001G213700 [exp] 1088 / 0 AT2G27880 1214 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.009G001500 [exp] 1081 / 0 AT2G27880 1192 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.006G118600 [exp] 1051 / 0 AT2G27880 1068 / 0.0 ARGONAUTE 5, Argonaute family protein (.1) Potri.010G163800 [exp] 617 / 0 AT1G69440 1304 / 0.0 ZIPPY, ARGONAUTE7, Argonaute family protein (.1) Potri.008G010500 [exp] 523 / 9e-169 AT2G27040 1281 / 0.0 OVEREXPRESSOR OF CATIONIC PEROXIDASE 11, ARGONAUTE 4, Argonaute family protein (.1.2) Potri.014G159400 [exp] 510 / 9e-164 AT2G32940 1169 / 0.0 ARGONAUTE 6, Argonaute family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0638 [flax] [poplar] PAZ PF02170 [flax] [poplar] PAZ PAZ domain CL0219 [flax] [poplar] RNase_H PF02171 [flax] [poplar] Piwi Piwi domain CL0219 [flax] [poplar] PF08699 [flax] [poplar] ArgoL1 Argonaute linker 1 domain
Representative CDS sequence Show only first row Show all	>Lus10017983 pacid=23147999 polypeptide=Lus10017983 locus=Lus10017983.g ID=Lus10017983.BGIv1.0 annot-version=v1.0 ATGGTTAGGAAGAGGAGAACCGAAAATACACCGAGTGGTGGTGAGAGCTCTGAGCCTCAAGATCCTTCATCTGGCTCTGGCCAAGTTGGCCGCGGTGGAG GGCCCCAAGGTGGACGTGGTGGAGGCCAGCAGCCTCAGCAAGCTGGAGCCCCCCAAGGTGGTCGTGGTGGAGGCCAGCAGCCTCTTCAAGGCGGAGTTCC CCAAGGTGGCAGTGGTGGAGGCCAGCAGCCTCTTCAAGGCGGAGTTCCCCAAGGCGGCAGTGGTGGAGGCCAGCAGCCTCTTCAAGGCGGAGTTCCCCAA GGCGGCAGTGGTGGAGGCCAGCAGCCTCTTCAAGGCGGAGTTCCCCAAGGCGGCCGTGGCGGAGGCCAGCAGCCTCAGCAATTCGGAGGTCATCAAGGAG GCCGTGGTGGAGGCCAGCAGCCTCAGCAATTTGGAGGTCCCCAAGGCGGCCGTGGTGGAGGGCAGCAGCCTCAGCAATTTGGAGGTTCCCAAGTTTGCCG TGGTGTAGGCCAGCAGCCTCAGCAAGGTGGAGGCCAGCAGCCTCAGCAAGGTGGACGTGGAGGTGGCTATGGTGGAAGAGGACGTGGTGCTCTCCAGAAC CCTCCTTATGGAGGAAGAGGAGGGCCACCGCAACAGGGTGGTCGAGGATACGGATACGGTGGTGGCCGTGAAGGAGGCGGCCCACCTTATGCTCCACCAA GTGGACAATCCAGATCCCCTGTTCCCGAGCTGCCCCAAGCAACACCGCCTCCTTTTGAAGTTGGTGCGAGTCCTCAGCCGAAACATTCTGAGGCAAGTTC TTCACGGACACCTGAGCCTTCACCTGCTACTGGAGTTTCACAGCAGATGCAGCAACTAACAATTCAACAGGAAGGCCCATCTAGTCAAGCTATTCAGCCT GCTGTGCCACCTGCCTCGAGCAAGTCTGTTAGGTTTCCTCTTCGTCCTGGAAAGGGTACCGTTGGCCATAAGTGTGTGGTGAAAGCTAACCACTTCTTTG CGGAGCTTCCTGACAAAGATCTGCACCAATATGATGTTACCATCACTCCCGAGGTCGCTTCAAGAGGGGTTAATCGTGCTGTGATAAATCAGCTGGTTAC TTTGTACCGAGAATCCCATCTTGCGAAGCGGCTTCCTGCTTATGATGGGCGGAAGAGTCTCTACACTGCTGGGCCTTTGCCTTTCCAAACAAAGGAGTTC CGCATCACACTAGTTGATGAAGATGATGGAACAGGCGGTCAAAGGAGGGAAAGAGAATTCAAAGTCGTGATAAAGTTGGCTGCACGTGCAGACTTGCACC ATTTGGGACTCTTTTTGCAGGGGAGGCAAGCTGACGCACCACAGGAAGCACTCCAAGTTCTTGACATCGTTCTGCGAGAGTTGCCTAATTCGAGGTATTG TCCAGTTGGTCGATCATTTTATTCCCCTAATCTAGGGAGAAGACAGCCACTTGGTGATGGTCTGGAGAGCTGGCGTGGTTTCTATCAGAGCATTCGGCCT ACTCAAATGGGGCTGTCTCTGAATATCGATATGTCTTCGACTGCATTTATTGAGCCTCTGCATGTCATTGATTTCGTGTGTCAATTACTAAACCGTGATG TCTCCTCTAGGCCACTATTAGATGCTGACCGTGTTAAGATCAAAAGGGCTTTGAGAGGAGTAAAAGTTGAAGTTACCCACCGTGGAAATATGCGACGGAA GTACCGTATATCTGGCTTAACATCACAGGCTACCCGAGATCTGACTTTCCCTGTGGATGAGAGAGGGACCATGAAATCTGTTGTGGAGTACTTCTTTGAG ACTTATGGCTTCTCAATCCAGCATACTCAGTGGCCCTGCCTCCAAGTGGGTAATCAACAGAGGCCAAATTACTTGCCTATGGAGGTGTGCAAGATTGTGG AAGGTCAGAGGTACTCTAAAAAATTGAATGAGAAGCAGATAACTAATTTGTTAAAGGTCACCTGCCAGCGCCCTGTCGATAGAGAGCGTGATATTGTGGA GACTGTCAGGCATAATGCTTATCACGAGGATCCATATGCAACAGAGTTTGGTATCAAGATCAGTAAAAACCTTGCTTCTGTTGAAGCTCGTATACTGCCT GCTCCACGGCTCAAGTATCATGACACTGGGAGGGAGAAGGATTGCTTACCCCATGTTGGACAGTGGAACATGATGAACAAGAAAATGGTGAACGGGGGAA CTGTGAACAATTGGATATGCTTAAACTTCTCTCGACAAGTTCAAGACACTATGGCTCGTGGGTTTTGTTTTGAACTTGCACAGATGTGTCAAATTTCTGG CATGCAATATAATCCCGATCCAGTAATTCCACCAGTCAGTGGTAGACCAGATCACGTTGAAAAGGTGTTGAAAACTCACTACAGTAATGCTATGATGAAG CTCCCGAAAGGAAAAGAGCTTGATTTGCTCATCGTTATTCTTCCTGATGACAATGGATCTCTCTATGGGGACCTGAAGCGGATCTGTGAAACGGATCTTG GGCTTGTTAGTCAGTGCTGCTTGACAAAACATGTTTTCAAAATGAACAAGCAGTACCTAGCTAATGTGGCCTTGAAAATCAACGTGAAGGTTGGTGGAAG AAACACTGTGTTAGTTGATGCACTATCCCGACGAATTCCTTTGGTTAGTGATCGGCCGACGATCATCTTTGGTGCCGATGTCACTCACCCTCATCCCGGA GAGGACTCGAGTCCCTCTATCGCTGCTGTTGTGGCTTCTCAAGACTGGCCGGAGATAACGAAATATGCAGGGCTCGTCTGTGCTCAAGCTCATCGCCAGG AATTGATTCAGGACTTGTACAAGTCGTGGAACGATCCTGTCAGGGGGGCAGTTTCTGGTGGCATGGTCAAGGAGCTGCTCATTTCTTTCCGCCGAGCCAC TGGCCACAAACCGGAGCGTATTATATTCTACAGAGATGGAGTGAGCGAGGGACAATTCTATCAGGTGCTACTGTATGAGCTAGATGCCATTCGCAAGGCC TGTGCTTCCTTGGAGCCGAACTACCAGCCACCAGTGACTTTCGTCGTGGTCCAGAAGCGTCACCACACAAGGCTTTTTGCTGACAACCATAACAACCGCA ATTCTGTCGACAGGAGTGGGAATATACTGCCTGGTACTGTTGTGGACTCTAAAATATGCCATCCAACTGAATTCGACTTCTACCTTTGCAGCCATGCCGG AATACAGGCAAGAATTTTGCTAACAAGTGGAACTAGCCGTCCGGCACATTATCATGTTCTGTGGGACGAGAACAAGTTCTCTGCTGATGCTCTACAGTCG CTCACAAACAACCTCTGCTACACATATGCAAGGTGCACTCGCTCTGTTTCTATTGTGCCTCCTGCCTATTATGCACATCTTGCAGCATTCCGAGCCCGTT TCTACATGGAGCCTGACTCGTCAGACAGCGGTTCAATGACCAGCGGCACTGTGGGTGGTGGAGGTCAGGGAGGAAGAGGGACTCGAGCCCCTGGAGCCAA CGCTGTCCGCCCCTTGCCATCGTTGAAGGAGAATGTGAAGAGGGTTATGTTCTACTGCTAA
AA sequence Show only first row Show all	>Lus10017983 pacid=23147999 polypeptide=Lus10017983 locus=Lus10017983.g ID=Lus10017983.BGIv1.0 annot-version=v1.0 MVRKRRTENTPSGGESSEPQDPSSGSGQVGRGGGPQGGRGGGQQPQQAGAPQGGRGGGQQPLQGGVPQGGSGGGQQPLQGGVPQGGSGGGQQPLQGGVPQ GGSGGGQQPLQGGVPQGGRGGGQQPQQFGGHQGGRGGGQQPQQFGGPQGGRGGGQQPQQFGGSQVCRGVGQQPQQGGGQQPQQGGRGGGYGGRGRGALQN PPYGGRGGPPQQGGRGYGYGGGREGGGPPYAPPSGQSRSPVPELPQATPPPFEVGASPQPKHSEASSSRTPEPSPATGVSQQMQQLTIQQEGPSSQAIQP AVPPASSKSVRFPLRPGKGTVGHKCVVKANHFFAELPDKDLHQYDVTITPEVASRGVNRAVINQLVTLYRESHLAKRLPAYDGRKSLYTAGPLPFQTKEF RITLVDEDDGTGGQRREREFKVVIKLAARADLHHLGLFLQGRQADAPQEALQVLDIVLRELPNSRYCPVGRSFYSPNLGRRQPLGDGLESWRGFYQSIRP TQMGLSLNIDMSSTAFIEPLHVIDFVCQLLNRDVSSRPLLDADRVKIKRALRGVKVEVTHRGNMRRKYRISGLTSQATRDLTFPVDERGTMKSVVEYFFE TYGFSIQHTQWPCLQVGNQQRPNYLPMEVCKIVEGQRYSKKLNEKQITNLLKVTCQRPVDRERDIVETVRHNAYHEDPYATEFGIKISKNLASVEARILP APRLKYHDTGREKDCLPHVGQWNMMNKKMVNGGTVNNWICLNFSRQVQDTMARGFCFELAQMCQISGMQYNPDPVIPPVSGRPDHVEKVLKTHYSNAMMK LPKGKELDLLIVILPDDNGSLYGDLKRICETDLGLVSQCCLTKHVFKMNKQYLANVALKINVKVGGRNTVLVDALSRRIPLVSDRPTIIFGADVTHPHPG EDSSPSIAAVVASQDWPEITKYAGLVCAQAHRQELIQDLYKSWNDPVRGAVSGGMVKELLISFRRATGHKPERIIFYRDGVSEGQFYQVLLYELDAIRKA CASLEPNYQPPVTFVVVQKRHHTRLFADNHNNRNSVDRSGNILPGTVVDSKICHPTEFDFYLCSHAGIQARILLTSGTSRPAHYHVLWDENKFSADALQS LTNNLCYTYARCTRSVSIVPPAYYAHLAAFRARFYMEPDSSDSGSMTSGTVGGGGQGGRGTRAPGANAVRPLPSLKENVKRVMFYC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48410		AGO1	ARGONAUTE 1, Stabilizer of iro...		Lus10017983 [exp]	0	1
AT5G54260		MRE11, ATMRE11	ARABIDOPSIS MEIOTIC RECOMBINAT...		Lus10038568 [exp]	1.4	0.8661
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Lus10039795 [exp]	4.5	0.8458
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10017845 [exp]	5.3	0.8257
AT5G22030		UBP8	ubiquitin-specific protease 8 ...		Lus10013599 [exp]	6.6	0.8469
AT1G17130			Family of unknown function (DU...		Lus10013706 [exp]	6.9	0.8097
AT3G09560		ATPAH1	PHOSPHATIDIC ACID PHOSPHOHYDRO...		Lus10009064 [exp]	8.8	0.8552
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Lus10017098 [exp]	9.2	0.8450
AT3G07565			Protein of unknown function (D...		Lus10025582 [exp]	9.9	0.7618
AT1G73170			P-loop containing nucleoside t...		Lus10012291 [exp]	10.6	0.8426
AT1G17680			tetratricopeptide repeat (TPR)...		Lus10042212 [exp]	11.2	0.8335

Compare expression of checked genes

Lus10017983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.