Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73370 1087 / 0 ATSUS6, SUS6 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) AT5G37180 944 / 0 ATSUS5, SUS5 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) AT4G02280 811 / 0 ATSUS3, SUS3 sucrose synthase 3 (.1) AT5G49190 807 / 0 ATSUS2, SSA, SUS2 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) AT5G20830 764 / 0 ASUS1, ATSUS1, SUS1 sucrose synthase 1 (.1.2) AT3G43190 762 / 0 ATSUS4, SUS4 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) AT1G04920 133 / 2e-31 ATSPS3F sucrose phosphate synthase 3F (.1) AT4G10120 130 / 1e-30 ATSPS4F Sucrose-phosphate synthase family protein (.1.2) AT5G11110 125 / 5e-29 SPSA2, KNS2, ATSPS2F, SPS1 sucrose-phosphate synthase A2, SUCROSE PHOSPHATE SYNTHASE 1, KAONASHI 2, sucrose phosphate synthase 2F (.1) AT5G20280 113 / 3e-25 SPSA1, ATSPS1F sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041979 [exp] 1715 / 0 AT1G73370 1190 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10020791 [exp] 1066 / 0 AT1G73370 1200 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10007372 [exp] 1058 / 0 AT1G73370 1195 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Lus10001468 [exp] 802 / 0 AT4G02280 1385 / 0.0 sucrose synthase 3 (.1) Lus10020506 [exp] 789 / 0 AT3G43190 1420 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10012454 [exp] 763 / 0 AT3G43190 1374 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Lus10010308 [exp] 716 / 0 AT5G49190 1318 / 0.0 SUCROSE SYNTHASE FROM ARABIDOPSIS, sucrose synthase 2 (.1) Lus10013417 [exp] 513 / 6e-169 AT4G02280 1162 / 0.0 sucrose synthase 3 (.1) Lus10008205 [exp] 263 / 2e-79 AT4G02280 466 / 2e-159 sucrose synthase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029100 [exp] 1177 / 0 AT1G73370 1289 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.012G037200 [exp] 1157 / 0 AT1G73370 1284 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.004G081300 [exp] 1060 / 0 AT1G73370 1234 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 6, sucrose synthase 6 (.1.2) Potri.017G139100 [exp] 1035 / 0 AT5G37180 1231 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 5, sucrose synthase 5 (.1) Potri.002G202300 [exp] 823 / 0 AT4G02280 1439 / 0.0 sucrose synthase 3 (.1) Potri.018G063500 [exp] 785 / 0 AT3G43190 1410 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G136700 [exp] 765 / 0 AT3G43190 1375 / 0.0 ARABIDOPSIS THALIANA SUCROSE SYNTHASE 4, sucrose synthase 4 (.1) Potri.006G064300 [exp] 136 / 2e-32 AT5G20280 1625 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1) Potri.013G095500 [exp] 134 / 1e-31 AT4G10120 1513 / 0.0 Sucrose-phosphate synthase family protein (.1.2) Potri.018G025100 [exp] 129 / 4e-30 AT5G20280 1472 / 0.0 sucrose-phosphate synthase A1, sucrose phosphate synthase 1F (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [flax] [poplar] GT-B PF00534 [flax] [poplar] Glycos_transf_1 Glycosyl transferases group 1 CL0113 [flax] [poplar] GT-B PF00862 [flax] [poplar] Sucrose_synth Sucrose synthase
Representative CDS sequence Show only first row Show all	>Lus10017984 pacid=23147872 polypeptide=Lus10017984 locus=Lus10017984.g ID=Lus10017984.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCTTCACACCAACCATCTCTGAAGCGATCCGACACCATAGCGGAAACCATGCCGGACGCGCTGAAGCAGAGCCGGTACCACATGAAGAGGT GCTTCTCCAAGTTCATGTCGGGCGGCAAAAGGGTGATGAAGCACCAGAGCATTATGGATGAGCTTGCTTTGACCATCCAGGACAGAGGCGAGAGGGAGAA AGTGCTTGAGGGGTTGCTGGGTTACATCCTGAAAAGTACTCAGGAGGCGGCTGTGGTCCCACCGTTAGTTGCGTTCGCAGTCAGGCCGAACCCCGGGGTG TGGGAGTATGTCAAGGTGAGCGGCGATGATCTGACGGTTGATGGGATTTCAGGGTCTGAGTACTTGAATTTCAAGGAAATGATCTTCGACCCGAACTGGT ATGGAAAGGATGAGAATGCATTGGAGGTGGAATTTGGAGCATTTGACCACTCTTCCCCACACCTAACACTTTCATCCTCCATTGGAAATGGAGCCAAGTA CATCTCCAAGTTCTTGTCAACCAAGCTTGATGGGAGATCCTACAGTTCAAAGCAGTTGGTAGACTATCTCATAGGCCTCAACCACCATGGAGATAGCCTG ATGATCAATGACACACTGGATACACCAGCAAAGCTCCAAGCTGCACTCATACCAGCTGAATGCTATCTCTCAACTCTTCCATCAGATACTCCCTGCCAGG ATTTTCACCAAAGGCTGAAAGGATGGGGATTTGAGAATGGATGGGGAGACAATGCAGGAAGAGTTAAGGAGACAATGAGGATGCTGTCAGAGTCACTTCA AGCTCCTGATGCTGAGAAACTAGACCACCTTTTCAGCAGGATTCCCAACATGTTCAACGTTGTCATCTTCTCTCCACATGGATTCTTTGGACAGGCTGAT GTTCTTGGGTGGCCAGCTTCGGTACATCTTGTGCTACAAATTGGGGGCTACCAGATCCAAAAGAAGGCTTTCTTTGGTCATCTTAAGAATCTGATACCAT GTGTGGTTTACATTCTTGATCAAGTGAGAGGATTGGAAGAGGAGTTGCTTCACAGGATCAAGCAGCAAGGGCTTAGGGTGAAGCCTCAGATCATTGTGAA GCTAGAGGCACCCAAGTGTGACCAAGAAGTGGAACCTATTGAGAACACAACATATTCCTACATTCTCAGGATCCCATTCAAAACAAACAAAGGGACCATC CTTCCTCACTGGATCTCCCGTTTCGATGTCTACCCTTACCTCGAGAGATTTGCGCAGGCAAGTTCACTTCGATCGGTCGAGTTTTTTCTGTCTTCGTGTT GGTCAAACCACCGAACGATCCGATTCGAGTATGACAATTGTCTGTTTCTCCAATGGGTAGCTGACCAGCACTCTATTCCAAATAAACAGGATTCTGCTAA GGCCATTCTCGAGCACACAGAAGGCAAACCAGACCTGATAATGGGGAACTACAGCGATGGAAATTTGGTAGCCACTTTGGTAGCTAACAAGCTTGGAGTA ACCCTGGGAACCATTGCTCATGCACTGGAGAAAACCAAGTACGAAGACTCGGATGCGAAATGGAAAGATCTCGATCCGAAGTACCACTTCTCCTGCCAGT TCACCGCCGACATGGTCGCTATGAACTCTGCCGACTTCATCGTCACCAGCACTTACCAAGAGATTGCTGGAAGGTTGGAGAAGGCTGGACAGTACGAGAG CCACACTACATTCACGATGCCGGGTCTGTGTCGATTCGTGAAAGGGATCGATGTCTTCAATCCGAAGTTCAACATCGCTTCACCCGGAGCGGATCAATCA GTCTACTTCCCCAACACTGACAAGTTTAAAAGGTTGACTAAGTTCCACCCTGTGATTGAAGGGCTACTCTACAATAAGGAAGAGAACAATGACCATATAG GCTACCTAACTGACCCGAAGAAGCCGATAATCTTCTCGATGGCAAGAATGGACACTGTCAAGAACATGACAGGGCTAATAGAATGGTACGGCAAGAACAA AACCCTGAGGGAGCTGGTCAACCTAGTCATCGTGGGAGGGCTCTTCGACCCGAAAAAGTCAACGGACAGAGAAGAGATAGCAGAGATACAACAGATGCAT TCTTTAATCCAAAAGTACGGTCTCAAGGGACAGATGAGGTGGATCGCTGCTCAATCCGATCGGTACCGAAATGGTGAGCTCTACCGGTGCATTGCAGACA CTAAGGGAGCCTTTGTCCAGCCGGCATTCTACGAGGCATTCGGGCTCACGGTCATCGAAGCCATGAACTGTGGGCTTCCCACTTTCGCCACTGTTCACGG TGGACCAGCTGAGATCATAGTGGATGGCGTTTCGGGGTTCCACATCGATCCTTACAATGGCGATGAATCGGGTGGGAAGATTGTTCGTTTTTTTGAGAAA TGTAAGGTTGAACCGGGTTATTGGAGCGAGATTTCGTCAGGTGGGGTCAAGAGGAGCGACGAATGCTACACCTGGAACATCTATGCTAAGAAATTGGTGA ACATGGGTTCGATATACGGATTCTGGAGACGGTTTAACAAGGAGCAGAAGCTTGCTAAAGGGAGGTACATTCAGACTTTCTACAACCTCCATTTCAGGAA TTTGGTGAAGCAAAGTTTTGCTCTGAGTGAAGAACAGCAGTTCAAAGTGGTGCAGGAAGCAACTGGAGGGAAACCGAAAGGGCGACTGGGTCCAACCAAA TTGGCATCCCTATTGGGTCAACCGATTACTACAACTGATCAATCAAATCAGAAAGATCAAAAGCAGAAAGGTGCAATCAAGCCAATGGATGGTGCCACAA GTGATCAAGCTCAACCAATTGCAAGGAAAGGAGATTCCTTGCATGCCAAAGCAAAAGTGGGTTCTGCTAAAACGGAAGGTGGGGATCAGAGAGTAGGGTC TTGGACAAGTCAGCAGTTTATGAGGATGTTACCTTTGTTTTTGGTGGTATACTCGCTAGTCAGGATGTACTATCTGTTCAAGTATTGA
AA sequence Show only first row Show all	>Lus10017984 pacid=23147872 polypeptide=Lus10017984 locus=Lus10017984.g ID=Lus10017984.BGIv1.0 annot-version=v1.0 MAASSHQPSLKRSDTIAETMPDALKQSRYHMKRCFSKFMSGGKRVMKHQSIMDELALTIQDRGEREKVLEGLLGYILKSTQEAAVVPPLVAFAVRPNPGV WEYVKVSGDDLTVDGISGSEYLNFKEMIFDPNWYGKDENALEVEFGAFDHSSPHLTLSSSIGNGAKYISKFLSTKLDGRSYSSKQLVDYLIGLNHHGDSL MINDTLDTPAKLQAALIPAECYLSTLPSDTPCQDFHQRLKGWGFENGWGDNAGRVKETMRMLSESLQAPDAEKLDHLFSRIPNMFNVVIFSPHGFFGQAD VLGWPASVHLVLQIGGYQIQKKAFFGHLKNLIPCVVYILDQVRGLEEELLHRIKQQGLRVKPQIIVKLEAPKCDQEVEPIENTTYSYILRIPFKTNKGTI LPHWISRFDVYPYLERFAQASSLRSVEFFLSSCWSNHRTIRFEYDNCLFLQWVADQHSIPNKQDSAKAILEHTEGKPDLIMGNYSDGNLVATLVANKLGV TLGTIAHALEKTKYEDSDAKWKDLDPKYHFSCQFTADMVAMNSADFIVTSTYQEIAGRLEKAGQYESHTTFTMPGLCRFVKGIDVFNPKFNIASPGADQS VYFPNTDKFKRLTKFHPVIEGLLYNKEENNDHIGYLTDPKKPIIFSMARMDTVKNMTGLIEWYGKNKTLRELVNLVIVGGLFDPKKSTDREEIAEIQQMH SLIQKYGLKGQMRWIAAQSDRYRNGELYRCIADTKGAFVQPAFYEAFGLTVIEAMNCGLPTFATVHGGPAEIIVDGVSGFHIDPYNGDESGGKIVRFFEK CKVEPGYWSEISSGGVKRSDECYTWNIYAKKLVNMGSIYGFWRRFNKEQKLAKGRYIQTFYNLHFRNLVKQSFALSEEQQFKVVQEATGGKPKGRLGPTK LASLLGQPITTTDQSNQKDQKQKGAIKPMDGATSDQAQPIARKGDSLHAKAKVGSAKTEGGDQRVGSWTSQQFMRMLPLFLVVYSLVRMYYLFKY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Lus10017984 [exp]	0	1
AT1G06340			Plant Tudor-like protein (.1)		Lus10027325 [exp]	1.4	0.6862
AT5G27740		RFC3, EMB251, E...	replication factor C 3, EMBRYO...		Lus10041764 [exp]	7.7	0.7084
					Lus10031358 [exp]	12.4	0.6198
AT2G14830			Regulator of Vps4 activity in ...		Lus10018577 [exp]	23.2	0.6056
AT1G78160		APUM7	pumilio 7 (.1)		Lus10036469 [exp]	34.4	0.5997
AT5G16990			Zinc-binding dehydrogenase fam...		Lus10030086 [exp]	37.3	0.6090
					Lus10021285 [exp]	42.0	0.5844
AT3G46750			unknown protein		Lus10004979 [exp]	43.6	0.6213
AT4G25140		OLE1, OLEO1	oleosin 1 (.1)		Lus10027161 [exp]	44.5	0.5812
					Lus10009375 [exp]	49.9	0.5755

Compare expression of checked genes

Lus10017984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.