Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27750 422 / 1e-149 ISI1 IMPAIRED SUCROSE INDUCTION 1, binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041980 [exp] 540 / 0 AT4G27750 445 / 7e-159 IMPAIRED SUCROSE INDUCTION 1, binding (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029300 [exp] 446 / 6e-159 AT4G27750 389 / 9e-137 IMPAIRED SUCROSE INDUCTION 1, binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08045 [flax] [poplar] CDC14 Cell division control protein 14, SIN component
Representative CDS sequence Show only first row Show all	>Lus10017985 pacid=23148004 polypeptide=Lus10017985 locus=Lus10017985.g ID=Lus10017985.BGIv1.0 annot-version=v1.0 ATGCTGCTGAAGAAGCCGCTATGGAGCGTGGGATTGGAGGAGGCGGCAAAAGAAAGCTCCGACTCGTCGGCACAACAACAACAAAAACAACAAGCATCGT CGTCGTCGGAGGTGGTGGAGGAGCTGGTTAACTCGTTAACGCGGCAGAGGCTATACCGAGAGGTGACTCTCGCCCTCAGGTCAAGCCTCCGCGACGCTCG AGCTGAGTTTTCGTTCCTCCGCCTCCGTGGACTGCGCTCCATCCTCAACTTCCTCAGATCCGTCTCCCTCTCTGATTCAGCCATCACTCTATTCCCGCAG ACTCAATCCATCTCTGACCTTCAAGTGGTTCCGGTGCTGTTCCAGCACTCGCTAAAAGAATCGGACGATGTCAACATCGTGGAAAGCTTGGATCATATAT TAGGCGTCGAGCCAGTGCGAATCACGAGTCCTTCGACGGACGCAGAAGTGGCTCTTGCTCTGCGAGTTCTGGAAGGATGTTGTTTGCTTCACAGGGAGAG CACGTTGTTGGCTCATCAGCACAAGGCGATTCAGGTATTGATGCATATACTGTCAACTAGAGGTGTGCTTGAGCAAGGTGCCTGTCTGGATGCTCTGGTT GCTATCATGTTGGATTCTTCAGCTAATCAAGTGGATTTTGAGGCGTGCAATGGCATTGAGGAAGTAGCAGTACTTATTAGGGACAAACAAGTAGATGAAA ATCTCAGGTTAAAATGCGGAGAGTTCTTGCTGCTGCTCATCGGCCATGTTAACGGGAGGGAAGGGACTCCCATGGCAACTGTGCACGACGACTTGAGACG ACTTCTTGGCGAGAAATCTGCGTCACTGATATGGGCAGCAAGTCAATTCGGGTCGACCCTCGATCCTGAGCAGAGACTAACCGCTCTACAAATCCAGGCT CGGAGAGTTTTGGAGTCCCTGGATCTTTACTGA
AA sequence Show only first row Show all	>Lus10017985 pacid=23148004 polypeptide=Lus10017985 locus=Lus10017985.g ID=Lus10017985.BGIv1.0 annot-version=v1.0 MLLKKPLWSVGLEEAAKESSDSSAQQQQKQQASSSSEVVEELVNSLTRQRLYREVTLALRSSLRDARAEFSFLRLRGLRSILNFLRSVSLSDSAITLFPQ TQSISDLQVVPVLFQHSLKESDDVNIVESLDHILGVEPVRITSPSTDAEVALALRVLEGCCLLHRESTLLAHQHKAIQVLMHILSTRGVLEQGACLDALV AIMLDSSANQVDFEACNGIEEVAVLIRDKQVDENLRLKCGEFLLLLIGHVNGREGTPMATVHDDLRRLLGEKSASLIWAASQFGSTLDPEQRLTALQIQA RRVLESLDLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G27750		ISI1	IMPAIRED SUCROSE INDUCTION 1, ...		Lus10017985 [exp]	0	1
AT1G20770			unknown protein		Lus10013217 [exp]	3.3	0.8916
AT5G15220			Ribosomal protein L27 family p...		Lus10007170 [exp]	7.1	0.8851
AT2G16860			GCIP-interacting family protei...		Lus10027464 [exp]	10.2	0.8781
AT2G45520			unknown protein		Lus10015859 [exp]	13.4	0.8593
AT1G20575		DPMS1	dolichol phosphate mannose syn...		Lus10013228 [exp]	15.0	0.8509
AT1G43860			sequence-specific DNA binding ...		Lus10029749 [exp]	16.1	0.8624
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028160 [exp]	16.5	0.8529
AT4G22000			unknown protein		Lus10008487 [exp]	19.3	0.8647
AT5G30490			unknown protein		Lus10037824 [exp]	19.7	0.8491
AT1G56590		ZIP4	ZIG SUPPRESSOR 4, Clathrin ada...		Lus10010899 [exp]	22.8	0.8302

Compare expression of checked genes

Lus10017985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.