Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17850 496 / 6e-174 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) AT2G40760 97 / 3e-21 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) AT1G09280 71 / 6e-13 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041981 [exp] 840 / 0 AT1G17850 503 / 1e-176 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Lus10029020 [exp] 98 / 7e-22 AT2G40760 568 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Lus10008045 [exp] 71 / 8e-13 AT1G09280 748 / 0.0 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029600 [exp] 529 / 0 AT1G17850 528 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1.2) Potri.019G059400 [exp] 99 / 5e-22 AT2G40760 553 / 0.0 Rhodanese/Cell cycle control phosphatase superfamily protein (.1) Potri.005G011300 [exp] 81 / 6e-16 AT1G09280 773 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00581 [flax] [poplar] Rhodanese Rhodanese-like domain
Representative CDS sequence Show only first row Show all	>Lus10017986 pacid=23148015 polypeptide=Lus10017986 locus=Lus10017986.g ID=Lus10017986.BGIv1.0 annot-version=v1.0 ATGATGCTCTGCAACTCCTTGCCATCCTCTTCGTTCACCTCCACCGTCGCCATTGCAGCGAAGAGCTCCTCTATACCCGTAACTCATAACTTTCTCGTCC ATTCCGATGTTGTCCAATTCAACCTCTGCTCCGGCGCAAGTTCCAACTTGTGGTGTTTCCCACTGACGGAGCAACGCCGCCGCCACAGAGAAGCGAATCA GAAGAGATGGGGCAGCTTACAGTTATCTCCTCGCATTCGATGCTCACTTAATGGAAAAATCATCGCGACGCAGCAGCTTGTTCCGAGTGATTTCATAGTG GTGAACTTCTACCGGTTTGTGTTCATCGGAGATCCTCAGCTGGAAGTTTCCACGCATCTTGACTTCGTAAAGGATCTCGACTTACATGGCCGCATATATT TGAACGAGCAAGGGATCAACGCTCAGTACAGTGGGCCAACAAAAGACGCTCTTGCGTATGTGGAATGGTTGAGGAATGATTCCAGATTCTCGGACTTGCT GGTGCAGATATCTCCTGCATTTAGTGGACATGCGTTCCCAAAACTAAGGCTGCGGTATAAGCCATCTCTAGTGCAGGCAAGAATGCTTTCCTTTTATCCT ATGGAAGGAGGGAGTTCACATCTCCCGTTGCTTGACCCATCAATGCGAGCAGAGCCACTGACACCTTCTGAGTGGAGGCAACGATTGGAAGCAATATCCG ACCGAAACCATGTTCTACTGGATGTGAGAAATGATATTAGATTCAGGTTCTTCCAACTTATGAAGCATCTGTCATTCCTTGCACCAGGTTATGAGTGGGA TGTTGGCCATTTTCAAGGTAGCCAGCGACCTGATGTGGACAGTTTCAGGAATTGTTCTTTCGGGTTATCCGATAATGAGGTTGCTGCTTCTGATCCTTTA GCTAATGTTGATAAAGAGGAGACGGATGTGCTCATGTACTGTACTGGAGGCATTCGTTGTGATGTTTATTCGACAATCCTTAGACAGCAAGGCTTCCAGA ATCTGTACACTTTGAAAGGCGGCGTCTCTCATTATCTAGAGCAAGAAGGTCCTGCCGGATGGAACGGGAACTTGTTTGTCTTCGACGACCGGCTTTCGCT ACCACCTTCAGCTTACAACCCTGAAACCGCCACAGCAACCGAAACCCCTCATCACCAAAGTTATCATCATCAAAATGCCAATCCTTTCGCTAGATGCTAC GTCTGCGAATCGGAAGTCTCCGAGCTAAGGCACCGAAACTGCGCCAATCCAGACTGCAATTTCCTCTTCCTGTGCTGCGAAAACTGTGTGGATGATCTAA GAGGATGCTGTTGCGAGAAATGCACGACAGGGCCTCGCCTTCGACCTGTTCTTCCGGGAGCTCAGAGGTACATGAAGTGGCATGTCTATCGAGATTCGAG GCCGGAAAGCACGGTTGTTATCGAGTCCGATAAGAAGAAAGGGATAGCTTGCTCTCAGTTAACTTAA
AA sequence Show only first row Show all	>Lus10017986 pacid=23148015 polypeptide=Lus10017986 locus=Lus10017986.g ID=Lus10017986.BGIv1.0 annot-version=v1.0 MMLCNSLPSSSFTSTVAIAAKSSSIPVTHNFLVHSDVVQFNLCSGASSNLWCFPLTEQRRRHREANQKRWGSLQLSPRIRCSLNGKIIATQQLVPSDFIV VNFYRFVFIGDPQLEVSTHLDFVKDLDLHGRIYLNEQGINAQYSGPTKDALAYVEWLRNDSRFSDLLVQISPAFSGHAFPKLRLRYKPSLVQARMLSFYP MEGGSSHLPLLDPSMRAEPLTPSEWRQRLEAISDRNHVLLDVRNDIRFRFFQLMKHLSFLAPGYEWDVGHFQGSQRPDVDSFRNCSFGLSDNEVAASDPL ANVDKEETDVLMYCTGGIRCDVYSTILRQQGFQNLYTLKGGVSHYLEQEGPAGWNGNLFVFDDRLSLPPSAYNPETATATETPHHQSYHHQNANPFARCY VCESEVSELRHRNCANPDCNFLFLCCENCVDDLRGCCCEKCTTGPRLRPVLPGAQRYMKWHVYRDSRPESTVVIESDKKKGIACSQLT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G17850			Rhodanese/Cell cycle control p...		Lus10017986 [exp]	0	1
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Lus10016174 [exp]	7.7	0.9002
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10038809 [exp]	10.8	0.8937
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Lus10021693 [exp]	13.9	0.8940
AT3G54210			Ribosomal protein L17 family p...		Lus10007002 [exp]	20.9	0.8890
AT2G04530		CPZ, TRZ2	TRNASE Z 2, Metallo-hydrolase/...		Lus10014623 [exp]	23.7	0.8825
AT1G17850			Rhodanese/Cell cycle control p...		Lus10041981 [exp]	25.3	0.8551
AT3G08740			elongation factor P (EF-P) fam...		Lus10022740 [exp]	27.5	0.8863
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10000221 [exp]	28.9	0.8843
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10031981 [exp]	29.3	0.8803
AT5G57030		LUT2	LUTEIN DEFICIENT 2, Lycopene b...		Lus10021576 [exp]	29.5	0.8839

Compare expression of checked genes

Lus10017986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.