Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49220 78 / 5e-15 Protein of unknown function (DUF789) (.1) AT1G03610 75 / 2e-14 Protein of unknown function (DUF789) (.1) AT4G03420 74 / 3e-14 Protein of unknown function (DUF789) (.1) AT2G01260 74 / 5e-14 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) AT1G15030 73 / 2e-13 Protein of unknown function (DUF789) (.1) AT5G23380 71 / 3e-13 Protein of unknown function (DUF789) (.1) AT1G17830 67 / 1e-11 Protein of unknown function (DUF789) (.1) AT4G16100 63 / 3e-10 Protein of unknown function (DUF789) (.1) AT4G28150 59 / 3e-09 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) AT1G73210 51 / 2e-06 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041982 [exp] 1146 / 0 AT2G01260 79 / 2e-15 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Lus10033747 [exp] 225 / 2e-64 AT1G15030 80 / 5e-16 Protein of unknown function (DUF789) (.1) Lus10031598 [exp] 184 / 5e-50 AT1G15030 63 / 2e-10 Protein of unknown function (DUF789) (.1) Lus10016842 [exp] 70 / 2e-12 AT4G16100 272 / 8e-89 Protein of unknown function (DUF789) (.1) Lus10037717 [exp] 71 / 3e-12 AT4G16100 321 / 2e-103 Protein of unknown function (DUF789) (.1) Lus10018572 [exp] 68 / 6e-12 AT4G03420 405 / 1e-142 Protein of unknown function (DUF789) (.1) Lus10037716 [exp] 67 / 3e-11 AT4G16100 311 / 4e-103 Protein of unknown function (DUF789) (.1) Lus10016841 [exp] 65 / 8e-11 AT4G16100 310 / 2e-102 Protein of unknown function (DUF789) (.1) Lus10031632 [exp] 62 / 4e-10 AT4G03420 345 / 2e-119 Protein of unknown function (DUF789) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G068700 [exp] 344 / 1e-104 AT1G73210 100 / 2e-22 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2) Potri.017G152601 [exp] 344 / 1e-104 AT1G03610 95 / 9e-21 Protein of unknown function (DUF789) (.1) Potri.013G149400 [exp] 224 / 4e-63 AT1G15030 82 / 2e-16 Protein of unknown function (DUF789) (.1) Potri.019G119100 [exp] 205 / 8e-60 AT2G01260 84 / 1e-17 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.017G155200 [exp] 76 / 1e-14 AT1G17830 328 / 9e-112 Protein of unknown function (DUF789) (.1) Potri.018G152500 [exp] 75 / 2e-14 AT1G17830 321 / 3e-109 Protein of unknown function (DUF789) (.1) Potri.013G144000 [exp] 74 / 6e-14 AT4G03420 414 / 2e-146 Protein of unknown function (DUF789) (.1) Potri.010G120700 [exp] 74 / 1e-13 AT2G01260 367 / 1e-125 Protein of unknown function (DUF789) (.1), Protein of unknown function (DUF789) (.2), Protein of unknown function (DUF789) (.3) Potri.008G213300 [exp] 66 / 5e-11 AT5G49220 338 / 2e-113 Protein of unknown function (DUF789) (.1) Potri.019G103000 [exp] 63 / 2e-10 AT4G03420 427 / 2e-151 Protein of unknown function (DUF789) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05623 [flax] [poplar] DUF789 Protein of unknown function (DUF789)
Representative CDS sequence Show only first row Show all	>Lus10017987 pacid=23147957 polypeptide=Lus10017987 locus=Lus10017987.g ID=Lus10017987.BGIv1.0 annot-version=v1.0 ATGGAATATATGTACCTGGTTTCGTCACCATCCGATTACGTCCTTGGAGCTAAGCCTATTCTTCCTCACCACCCGATCGATTCTAATTCAGCCGAAAACA CCATCTTTAGAGCAGCAGATGGTTTGATTAGGAAGAAGGGATGTAAGGAAATGAGTCCACCACCTAGCAAGACTGACAAGAAGAGCTTGAAGAGGAAGAC GAGAAAGAAGGCGAAACGAAACAAAAACCACCACCATAATGCTGTATCGTCATCCCATGATACCTCTGCTGGCTCGAGCGTCCTAGATGAGCACAACAAC AATGGACGCTCGAACGCTGAAAAGTCCGGGACTTCACTCCCGGAAGTTTCAGCGGAATCGGGTTTCAGTACAAGGAAGAGCCATGCCCGTCGCAAGAACT TGTTGAGTGGCACTACTGCTGATTTTCGAACACTTTTGCCCCGGAAGCAACTCAAGGGTTCGTCTAATACCGTAACCAGAACTGGGAAGGAAAACAGCTA CTCAGTCTGGCAGAAGGTTCAAAGGAACGAGTTATTACCGCTAAGTGGAAACGATATAGACAAGGGATCCTCCATTTGTTGTTTGAAGCTTAAAGACGAA GCTTCGAACGAAAGGAACGTAAGCAAAGAAAAAGCTTGTAAGAAGTCGAAAAGGAAGAGTCTTTGCTTCAAAGAAGGAATCTTGCAGCAGAATGGAATGT TGGTGAAATGTGTTCCGAGGGTCTCTTATAAGAATAGCTACCCCGGGTCCGGGTTGCAGACCCTCAGAGTTGAGTTTGTTAATCACGACACCGAGGATAA GGAGACATCGGTGTCGGAGTTGATTAAGGTTGATCAAACAAGTAAAGAAGCTGAAATTGCAGAGTTCAACAAACATGGATCTGTTCTGCAAAAGTGGATA CCGATTGGGATAATAAAGGAACCTGGACTGTCCAACTCTGTTGGATTCAAGAAGTTGAATTGGGATGTCGAAATACCTGATCCGGATCTGGATACAGTTG CTGATGTGGAAGATCGCATATCTCTTGCAGATGAATGTGTTGAGAAGACAATAAGTGATTCAGACGATTCTTCCCGATCTGGGGAAGCCTGCTTAGTGAT TCCAACCTGTTATAAGGACCTGGCTAGTTTGAGAGTTAGATCAGAAGGAATTGTACAAGCAGTGAATGATACAATTACGGTGCAACTGGCATCCGAAGCG ATAGAGTTCGCCACTGGATGTCCGATTGCAGAGTTCGAAAGACTTCTCCATTCAACTTCCCCATCTGTTTCACAGTCAAACATTTCACTCCGCTCTCTAT GGCAGTGGTACGAGAAGCACGGAATCTACGGGTTAGAAGTCAAAGCAGAAGATCATCAAAACTCAATTAGATTAGGGATTGACCAACTTTCGTTTCGTGC TTATTTTGTCCCGTTTCTATCAGCAATTCAGCTGTTTGGGGAGGAAAGAAAAGAAACCCAGAATAACGGTTCAGTACTTCCCATACTTTCTGCAAATGCA ACTGACAATGACGGAGAGCTTCTGTTGGAGTACTTCGAATTCGAAAGGCCTCAGCTAAGACAGCCACTATATGAGAAGATACATGAACTGGCAAGAGGTG ATGGACTTTTGGAACGCAAGATGTTCGGGGACCCATCTACATTGGTCTCGACAAGTCTACAAGAACTGCACAAAAAATCCTGGTACTCGGTAGCATGGTA CCCTATATACAAGATACCTGATGGCAGCTTACGAGCTGCATTCTTGACATATCACTCATTTGGACATTTGGTTGAAAGAAAACCTGAACTTGGTTCTCCA ACCATGGTATGTCCAGTTGTTGGTCTTCAGAGTTATAATGCTCAGGATGAATGCTGGTTCCAACCACGGCATAGTGCCGGAGATCGCCAGACAGAAGAAG GGATGATAGGATCTAGTCAAGTCCTGAAGGAGAGACTGAGAACACTTAAAGAGACAGCATGTTGCATGGCAAGAGCCACGATAAAGAAAGGCGAGGAGAA ACCTGCGAAAAATTGGCATCCTGACTATGAGTTTTTCCTCTCTAGACAACTCTATTGA
AA sequence Show only first row Show all	>Lus10017987 pacid=23147957 polypeptide=Lus10017987 locus=Lus10017987.g ID=Lus10017987.BGIv1.0 annot-version=v1.0 MEYMYLVSSPSDYVLGAKPILPHHPIDSNSAENTIFRAADGLIRKKGCKEMSPPPSKTDKKSLKRKTRKKAKRNKNHHHNAVSSSHDTSAGSSVLDEHNN NGRSNAEKSGTSLPEVSAESGFSTRKSHARRKNLLSGTTADFRTLLPRKQLKGSSNTVTRTGKENSYSVWQKVQRNELLPLSGNDIDKGSSICCLKLKDE ASNERNVSKEKACKKSKRKSLCFKEGILQQNGMLVKCVPRVSYKNSYPGSGLQTLRVEFVNHDTEDKETSVSELIKVDQTSKEAEIAEFNKHGSVLQKWI PIGIIKEPGLSNSVGFKKLNWDVEIPDPDLDTVADVEDRISLADECVEKTISDSDDSSRSGEACLVIPTCYKDLASLRVRSEGIVQAVNDTITVQLASEA IEFATGCPIAEFERLLHSTSPSVSQSNISLRSLWQWYEKHGIYGLEVKAEDHQNSIRLGIDQLSFRAYFVPFLSAIQLFGEERKETQNNGSVLPILSANA TDNDGELLLEYFEFERPQLRQPLYEKIHELARGDGLLERKMFGDPSTLVSTSLQELHKKSWYSVAWYPIYKIPDGSLRAAFLTYHSFGHLVERKPELGSP TMVCPVVGLQSYNAQDECWFQPRHSAGDRQTEEGMIGSSQVLKERLRTLKETACCMARATIKKGEEKPAKNWHPDYEFFLSRQLY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01260			Protein of unknown function (D...		Lus10017987 [exp]	0	1
					Lus10033349 [exp]	1.0	0.7849
AT2G14830			Regulator of Vps4 activity in ...		Lus10039808 [exp]	6.3	0.7501
AT4G08850			Leucine-rich repeat receptor-l...		Lus10004046 [exp]	16.3	0.7297
AT2G26710		CYP72B1, CYP734...	PHYB ACTIVATION TAGGED SUPPRES...		Lus10033044 [exp]	20.4	0.6686
AT5G17600			RING/U-box superfamily protein...		Lus10008458 [exp]	22.7	0.6703
AT4G10850		SWEET7, AtSWEET...	Nodulin MtN3 family protein (....		Lus10023047 [exp]	24.5	0.6703
AT5G12060			Plant self-incompatibility pro...		Lus10023195 [exp]	26.2	0.6703
AT3G52080		CHX28	cation/hydrogen exchanger 28 (...		Lus10016403 [exp]	26.5	0.6608
AT2G26390			Serine protease inhibitor (SER...		Lus10039336 [exp]	27.2	0.6698
AT3G24060			Plant self-incompatibility pro...		Lus10017719 [exp]	29.2	0.6688

Compare expression of checked genes

Lus10017987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.