Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48380 286 / 4e-94 HYP7, RHL1 HYPOCOTYL 7, root hair initiation protein root hairless 1 (RHL1) (.1), root hair initiation protein root hairless 1 (RHL1) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041983 [exp] 577 / 0 AT1G48380 283 / 5e-93 HYPOCOTYL 7, root hair initiation protein root hairless 1 (RHL1) (.1), root hair initiation protein root hairless 1 (RHL1) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G069400 [exp] 328 / 4e-109 AT1G48380 281 / 9e-92 HYPOCOTYL 7, root hair initiation protein root hairless 1 (RHL1) (.1), root hair initiation protein root hairless 1 (RHL1) (.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017988 pacid=23148013 polypeptide=Lus10017988 locus=Lus10017988.g ID=Lus10017988.BGIv1.0 annot-version=v1.0 ATGGTGCGAGCTTCCAAGAAGTCTCAGGCGGCGGAGCAGAACCAGAACCCGGACGCTCTAGAGCGGAAGCGATTGAAGAAGCTCGCCTTCTCCAGCGGCC TCCTGTCGCCGACTCCGGCAAACAACTACGCGCCGCTGGCCCCTGCCAAGACCGTGCTCAAGCATAATGGCAAGGATATCCTGCGCAAGTCTCAGAGGAA GAATCGCTTTCTCTTCTCGTTTTCTGGTCTGTTGGCTCCGGTTGCCGGGGGCAAGATTGGGGAGCTCAAGGATTTGGGAACCAAAAACCCGATTCTCTAC CTCGATTTCCCTCAGGGCCGGATGAAGTTGCTTGGGACTATCGTCTATCCGAAGAACCGGTACTTAACTTTGCAGTTCTCGAGGGGTGGGAAGAATGCGA CGTGTGAGGATCTCTTTGATAACATGGTCGTGTTTTCTGAAGCATGGTGGATTGGAACTAAGGAAGAGAATCCAGACGAATCCAGGCTTGATTTCCCCAA AGAACTGATTCAGGAGCAGAAGGCTGATTATGACTTTCAAGGTGGAGCAGGTGCTGAACCAATGAATAAGAAGGTTGTGAAGACAAATGTCGCAAAGGAT GTCGAAGAAGATTCTCCAGAATCTGAGCTTGAAAAGTATGGGTCCGATGATATGGATTTGAAAGAAGTTACACCTATTCGACACTCGGAGAGAGCTGCTG GGAGGAAATTCAGGTTTACTGAGGCTTCTTCTGAAGACAATACTGGGGAAGCTGATGTTGGCCCATCTAAGGATGTGGAAGAAGAAGAAGAAGAAGAAGG AGAGGAAAGAGAAGAAAAAGCAAGTACTCCATTCGACACTGATTTCAATGATTCAGAAGAAGGGGTTGGCTTGTCTGCTCCAGTTGAAGCATCTGAAATA TCAGAGTTGAAACCCAAAAGATCGTCCAAGTATAATGCTCCAGCATCAGTATCTACTAAAACTTCAGGCAGTAAACCTGGCTCACTTGTTCAAGCTAGCA TATCTACATTGTTCAGTAAGATGAAAGAGAAAAAAAAAGTCGATGAGAAGAGCACACCGAAGAATTCAAGGAAATCAAACTCATCAAAAGCCACTGGAGA CAATTTGGAGCACAAAGAATCCAAAAGGAAACTTAGTCTGATAGAAGAGGATGATATTGAAGAATTCTCGAGCTCCTCACAGGATGAAAAAGAAAGTGAT GAAGATTGGGAAGCCTGA
AA sequence Show only first row Show all	>Lus10017988 pacid=23148013 polypeptide=Lus10017988 locus=Lus10017988.g ID=Lus10017988.BGIv1.0 annot-version=v1.0 MVRASKKSQAAEQNQNPDALERKRLKKLAFSSGLLSPTPANNYAPLAPAKTVLKHNGKDILRKSQRKNRFLFSFSGLLAPVAGGKIGELKDLGTKNPILY LDFPQGRMKLLGTIVYPKNRYLTLQFSRGGKNATCEDLFDNMVVFSEAWWIGTKEENPDESRLDFPKELIQEQKADYDFQGGAGAEPMNKKVVKTNVAKD VEEDSPESELEKYGSDDMDLKEVTPIRHSERAAGRKFRFTEASSEDNTGEADVGPSKDVEEEEEEEGEEREEKASTPFDTDFNDSEEGVGLSAPVEASEI SELKPKRSSKYNAPASVSTKTSGSKPGSLVQASISTLFSKMKEKKKVDEKSTPKNSRKSNSSKATGDNLEHKESKRKLSLIEEDDIEEFSSSSQDEKESD EDWEA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48380		HYP7, RHL1	HYPOCOTYL 7, root hair initiat...		Lus10017988 [exp]	0	1
AT3G26750			unknown protein		Lus10021459 [exp]	1.0	0.8096
AT5G52140			RING/U-box superfamily protein...		Lus10005768 [exp]	8.3	0.6674
AT5G48385			FRIGIDA-like protein (.1)		Lus10002146 [exp]	12.6	0.7157
AT2G45620			Nucleotidyltransferase family ...		Lus10009309 [exp]	16.1	0.7108
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10018904 [exp]	16.5	0.7122
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Lus10010156 [exp]	19.0	0.7108
AT1G44835			YbaK/aminoacyl-tRNA synthetase...		Lus10025613 [exp]	19.2	0.7028
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Lus10021695 [exp]	19.7	0.6913
AT1G77250			RING/FYVE/PHD-type zinc finger...		Lus10029733 [exp]	20.8	0.7091
AT2G17020			F-box/RNI-like superfamily pro...		Lus10023988 [exp]	20.9	0.7132

Compare expression of checked genes

Lus10017988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.