Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17800 478 / 3e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) AT1G48450 459 / 1e-160 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) AT1G32160 300 / 1e-98 Protein of unknown function (DUF760) (.1) AT3G07310 185 / 1e-54 Protein of unknown function (DUF760) (.1) AT5G48590 163 / 2e-46 Protein of unknown function (DUF760) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041984 [exp] 742 / 0 AT3G17800 494 / 3e-174 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2) Lus10035392 [exp] 340 / 3e-114 AT1G32160 433 / 6e-151 Protein of unknown function (DUF760) (.1) Lus10030993 [exp] 303 / 2e-99 AT1G32160 390 / 4e-134 Protein of unknown function (DUF760) (.1) Lus10000084 [exp] 230 / 1e-73 AT1G32160 304 / 5e-103 Protein of unknown function (DUF760) (.1) Lus10025896 [exp] 192 / 1e-56 AT3G07310 423 / 1e-147 Protein of unknown function (DUF760) (.1) Lus10038208 [exp] 191 / 4e-56 AT3G07310 407 / 3e-141 Protein of unknown function (DUF760) (.1) Lus10002343 [exp] 178 / 1e-51 AT3G07310 348 / 8e-119 Protein of unknown function (DUF760) (.1) Lus10002342 [exp] 174 / 3e-50 AT3G07310 332 / 2e-112 Protein of unknown function (DUF760) (.1) Lus10003162 [exp] 167 / 2e-47 AT3G07310 340 / 1e-115 Protein of unknown function (DUF760) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G031200 [exp] 519 / 0 AT1G48450 490 / 6e-173 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.012G042400 [exp] 483 / 2e-170 AT1G48450 477 / 5e-168 Protein of unknown function (DUF760) (.1), Protein of unknown function (DUF760) (.2), Protein of unknown function (DUF760) (.3) Potri.003G097400 [exp] 347 / 1e-116 AT1G32160 488 / 3e-172 Protein of unknown function (DUF760) (.1) Potri.002G247700 [exp] 188 / 3e-55 AT3G07310 380 / 9e-131 Protein of unknown function (DUF760) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05542 [flax] [poplar] DUF760 Protein of unknown function (DUF760)
Representative CDS sequence Show only first row Show all	>Lus10017989 pacid=23147910 polypeptide=Lus10017989 locus=Lus10017989.g ID=Lus10017989.BGIv1.0 annot-version=v1.0 ATGGAAGCAGCTTCTGTTGTCCAATCCGCTAGCCTTGTGTACTCGAGGCAGTCGGTTCCCGTTAGTAGATTAGGATTCGTCTCTGCAAGTGGGCCGGATC TCTTGCCGGTTTCGTCGTCCCCAATCAAGCAATTCTCCACTGGATTAGGCTTGAAGTCTGGACGTAGAAATGTGTCTTTGAGAAGTAGAAGATCTCCAGT TGTCGTTAGGGCTTCATCATCATCATCATCGTCATCACGATCTCCGAATTCGGATGGCTCCATTTCATCAATTGCTCCCCTTAAGCTGGAGTCACCAGTG GGACAGTTTCTCTCTCAGATCTTAGTCAGCCATCCCCACCTTGTACCGGCTGCTGTCGAGCAGCAACTCGAGCAGCTCCAAACCGATCGAGAGGGGGAGA AGCCTAACGACGAGCCTGCTGCTCCAGGAACCGACTTGGTTCTCTACAGGAGAATTGCTGAAGTGAAGGCTAACGAAAGGAGAAAGACATTGGAAGAGAT TCTCTACGCTTTGATTGTGCAGAAGTTCATGGATGCCAATGTCTCATTGATACCTACATTGGCCCCGTCGGAACAATCTAGCCGGATTGATACATGGGCA AGCAAAGAAGAGAAGAAGCTTGAACAGCTTCACTCCCCTGAAGCATTCGAGATGATCCAGAACCATCTCACTCTTATACTAGGGAACAGGCTAGGAGACC CATCAGCCGTGGCACAAATAAGCAAGCTTCGAGTCGGTCAGGTATACGCAGCTTCGGTTATGTACGGCTACTTCCTGAAGCGGGTCGATCAGAGGTTCCA GCTTGAGAAAACGATGAAAGTCCTCCAGAGTGGAGGATCCGACAAAGCCATGGAGTACGATGTAAAGACCAGTGGCACTGACGGTTCGTACGAAGCAGTC TCTTCTTCCTCCACTTCTCCCCACCCAGAAGTGGCCGGAGCTTGGGCTGGCGGGATCAGTCCTGACGGGTTCGGCTCCGGGATGAAGCCCTCTCGGCTTA GGAGCTATGTGATGTCGTTCGATGGCGAGACACTGCAGAGGTATGCCACGATACGATCGAAAGAAGCGGTCACCATCATCGAGAAGCACACGGCGGCGCT GTTCGGGAGGCCGGAGATTGTCATTACACCAGAAGGTGCCATCGATTCGTCGAAAGATGAGACAATCAAGATCAGTTTCTCAGGGTTGAAGAGGCTTGTG CTTGAGGCCGTGACTTTTGGGTCCTTCCTGTGGGATGCTGAAGGGTATGTGGATTCTAGGTACCATTTTGTTATGAACTAA
AA sequence Show only first row Show all	>Lus10017989 pacid=23147910 polypeptide=Lus10017989 locus=Lus10017989.g ID=Lus10017989.BGIv1.0 annot-version=v1.0 MEAASVVQSASLVYSRQSVPVSRLGFVSASGPDLLPVSSSPIKQFSTGLGLKSGRRNVSLRSRRSPVVVRASSSSSSSSRSPNSDGSISSIAPLKLESPV GQFLSQILVSHPHLVPAAVEQQLEQLQTDREGEKPNDEPAAPGTDLVLYRRIAEVKANERRKTLEEILYALIVQKFMDANVSLIPTLAPSEQSSRIDTWA SKEEKKLEQLHSPEAFEMIQNHLTLILGNRLGDPSAVAQISKLRVGQVYAASVMYGYFLKRVDQRFQLEKTMKVLQSGGSDKAMEYDVKTSGTDGSYEAV SSSSTSPHPEVAGAWAGGISPDGFGSGMKPSRLRSYVMSFDGETLQRYATIRSKEAVTIIEKHTAALFGRPEIVITPEGAIDSSKDETIKISFSGLKRLV LEAVTFGSFLWDAEGYVDSRYHFVMN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17800			Protein of unknown function (D...		Lus10017989 [exp]	0	1
AT2G03430			Ankyrin repeat family protein ...		Lus10037116 [exp]	3.5	0.9061
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10022319 [exp]	5.1	0.9255
AT1G25380		ATNDT2	NAD+ transporter 2, ARABIDOPSI...		Lus10003041 [exp]	7.2	0.9008
AT1G20225			Thioredoxin superfamily protei...		Lus10017254 [exp]	9.4	0.8876
AT3G17800			Protein of unknown function (D...		Lus10041984 [exp]	10.0	0.9457
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10017374 [exp]	10.7	0.8952
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10009941 [exp]	15.9	0.8687
AT1G67330			Protein of unknown function (D...		Lus10015780 [exp]	18.7	0.8962
AT1G32500		ABCI7, ATNAP6	ATP-binding cassette I7, non-i...		Lus10010168 [exp]	19.7	0.8915
AT4G10790			UBX domain-containing protein ...		Lus10017317 [exp]	20.1	0.8803

Compare expression of checked genes

Lus10017989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.