Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G34130 1171 / 0 STT3B staurosporin and temperature sensitive 3-like b (.1) AT5G19690 414 / 2e-133 STT3A staurosporin and temperature sensitive 3-like A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041985 [exp] 1288 / 0 AT1G34130 1312 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Lus10011124 [exp] 397 / 1e-126 AT5G19690 1266 / 0.0 staurosporin and temperature sensitive 3-like A (.1) Lus10043241 [exp] 374 / 4e-118 AT5G19690 1233 / 0.0 staurosporin and temperature sensitive 3-like A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G036300 [exp] 1201 / 0 AT1G34130 1256 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Potri.015G028300 [exp] 1177 / 0 AT1G34130 1245 / 0.0 staurosporin and temperature sensitive 3-like b (.1) Potri.018G086000 [exp] 418 / 3e-135 AT5G19690 1157 / 0.0 staurosporin and temperature sensitive 3-like A (.1) Potri.006G163566 [exp] 0 / 1 AT5G19690 209 / 9e-63 staurosporin and temperature sensitive 3-like A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0111 [flax] [poplar] GT-C PF02516 [flax] [poplar] STT3 Oligosaccharyl transferase STT3 subunit
Representative CDS sequence Show only first row Show all	>Lus10017990 pacid=23147877 polypeptide=Lus10017990 locus=Lus10017990.g ID=Lus10017990.BGIv1.0 annot-version=v1.0 ATGGCCGTCACCACCAACGGCGCCGTCAACGGCACATCAAAATCCTCCTCCACCACCATGCCTCCTCCTCCTCCTCCTTCCTCCAATCTCAAACCAGATC TGCTCTCAAGGCTCTCATTCAAATCCCTAAAGCTGAAAACCAAGCAGCAGGAGCTCCTGATCCGCGTCTCCATCCTCGGACTCGTCTACATCCTCGCCTT CATCACCCGCCTCTTCAGCGTCCTCCGATACGAGTCCATGATCCACGAGTTCGACCCTTACTTCAATTACCGCACCACTCTCTACCTCACGCAGAAAGGA TTCTACGATTTCTGGAACTGGTTCGATTACGAGAGCTGGTACCCGCTCGGAAGGATCGTCGGCGGGACTCTCTACCCGGGGCTGATGGTCACTGCCGCCT TGATCTACTGGACTCTCCGATTCCTCCGATTCGCAGTCCACATCCGCGAGGTCTGCGTCCTGACAGCTCCTTTCTTCGCGTCGAACACCACTCTCGTGGC GTATTTCTTTGGAAAAGAGATTTGGGACACCGGAGCTGGACTCGTCGCCGCGGCGTTGATCGCGATCTGTCCTGGATACATATCGAGATCCGTCGCTGGA TCTTATGATAATGAAGCTGTGGCGATTTTCGCTCTGTTGTTGACGTTTTACCTGTTTGTTAAGGCGGTGAATACGGGGTCGTTAACTTGGTCTTTAGGTT CGGCGTTTGCGTATTTCTATATGGTTTCGGCGTGGGGAGGGTATGTGTTCATTATTAACTTGATCCCGCTCTATGTGCTGGTGTTGTTGATCACTGGGAG GTACTCGATGCGGCTGTATATTGCGTACAATTCTATGTATGTGCTCGGAATGCTGCTGGCTATGCAGATTAGGTTTGTTGGGTTTCAGCATGTGCAGTCT GGGGAGCACATGGCAGCCATGGGAGTGTTCTTCTTGATGCAGGTGTTTTACTTCTTAGACTGGGTCAAATACATGCTGAGCGATAAAAGGCTGTTTGAGA CCTTTTTGAGGATCACTGTGACTTGCACAGTGGGAGTCGCTGCTGTTGCTCTGGGAGTTGGTACAGCATCTGGGTATATTTCTCCTTGGGCAGGAAGATT CTACTCTCTTTTGGATCCCACCTATGCGAAGGATCACATCCCCATTATTGCTTCGGTATCAGAGCATCAGCCCACGGCATGGTCATCCTTCATGTTTGAT TTCCACATTCTGCTTTTCCTTTTCCCCGCGGGTCTCTACTTCTGCTTCAAGCGGCTGACAGATGCCACGATATTTATTGTCATGTACGGTCTCACAAGTA TGTACTTTGCTGGTGTCATGGTCCGGTTGATCTTAGTTGCCACACCAGCTGTTTGCCTTATCAGTGCAATTGCAATTTCTGCCACTGTGAAGAATTTGAC ACAGCTTTTGTGGACTAATAAGAGCAAGGCTGCCCAATCTGGTTCTTCCAAAGGTGCTAGTGGCACAAAGGCTTCCTCTAAGCGAGAAACCCATGGCGTG TTCAGTAAGCATGTGGACGTGAGCATTACCTTTGAAATTAGGTATGCAACGCACTGTACGTGGGTTACATCAGAGGCCTATTCATCTCCTTCGATTGTGT TGGCTGCTAGAGGTGCCCATGGCAATAAGGTCATCTTTGATGACTACCGTGAGGCATACTTTTGGCTCCAGCAGAATACTCCTACAGACGCTAAGATTAT GTCATGGTGGGATTACGGTTACCAGATTACTGCCATGGGAAACAGAACAGTTATTGTCGACAACAATACCTGGAATAATACACATATTGCAACTGTTGGG CGTGCAATGTCATCTTATGAAGACGAGGCATATGAGATCATGAGAGAACTTGATGTGAACTATGTCTTAGTTGTTTTTGGTGGAGTTACTGGTTACTCAT CTGACGACATCAACAAGTTTTTGTGGATGGTAAGAATTGGAGGCGGAGTATTCCCAGTAATTAAGGAACCTGATTACCTTGTCAATGGTGAATATCGTGT TGATAAAGGTGCTGCTCCCAAGATGTTGAACTGTCTCATGTACAAGCTGTGCTATTACCGATTTGGCGAGCTGATGACGGAGTATGGAAAACCTCCAGGA TTCGATCGGGCAAGAGGAGTGGAGATAGGGAACAAGGACATAAAGCTGGAGCATCTGGAAGAGGCATTCACCACAAGCAACTGGATCGTTCGGGTATACA AGGTGAAGCCACCAAACAACAGGTGGTGA
AA sequence Show only first row Show all	>Lus10017990 pacid=23147877 polypeptide=Lus10017990 locus=Lus10017990.g ID=Lus10017990.BGIv1.0 annot-version=v1.0 MAVTTNGAVNGTSKSSSTTMPPPPPPSSNLKPDLLSRLSFKSLKLKTKQQELLIRVSILGLVYILAFITRLFSVLRYESMIHEFDPYFNYRTTLYLTQKG FYDFWNWFDYESWYPLGRIVGGTLYPGLMVTAALIYWTLRFLRFAVHIREVCVLTAPFFASNTTLVAYFFGKEIWDTGAGLVAAALIAICPGYISRSVAG SYDNEAVAIFALLLTFYLFVKAVNTGSLTWSLGSAFAYFYMVSAWGGYVFIINLIPLYVLVLLITGRYSMRLYIAYNSMYVLGMLLAMQIRFVGFQHVQS GEHMAAMGVFFLMQVFYFLDWVKYMLSDKRLFETFLRITVTCTVGVAAVALGVGTASGYISPWAGRFYSLLDPTYAKDHIPIIASVSEHQPTAWSSFMFD FHILLFLFPAGLYFCFKRLTDATIFIVMYGLTSMYFAGVMVRLILVATPAVCLISAIAISATVKNLTQLLWTNKSKAAQSGSSKGASGTKASSKRETHGV FSKHVDVSITFEIRYATHCTWVTSEAYSSPSIVLAARGAHGNKVIFDDYREAYFWLQQNTPTDAKIMSWWDYGYQITAMGNRTVIVDNNTWNNTHIATVG RAMSSYEDEAYEIMRELDVNYVLVVFGGVTGYSSDDINKFLWMVRIGGGVFPVIKEPDYLVNGEYRVDKGAAPKMLNCLMYKLCYYRFGELMTEYGKPPG FDRARGVEIGNKDIKLEHLEEAFTTSNWIVRVYKVKPPNNRW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G34130		STT3B	staurosporin and temperature s...		Lus10017990 [exp]	0	1
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021681 [exp]	1.4	0.9448
AT1G53240		mMDH1	mitochondrial malate dehydroge...		Lus10017939 [exp]	1.7	0.9518
AT4G00740		QUA3	QUASIMODO 3, S-adenosyl-L-meth...		Lus10000808 [exp]	2.0	0.9343
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Lus10042497 [exp]	3.9	0.9345
AT5G13390		NEF1	no exine formation 1 (.1)		Lus10001797 [exp]	4.0	0.9299
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Lus10032817 [exp]	4.5	0.9341
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10034642 [exp]	6.0	0.9253
AT5G08160		ATPK3	serine/threonine protein kinas...		Lus10035273 [exp]	6.3	0.9266
AT3G24480			Leucine-rich repeat (LRR) fami...		Lus10017727 [exp]	6.7	0.9284
AT1G30300			Metallo-hydrolase/oxidoreducta...		Lus10038519 [exp]	6.8	0.9043

Compare expression of checked genes

Lus10017990 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.