Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17920 671 / 0 Outer arm dynein light chain 1 protein (.1.2) AT1G48540 637 / 0 Outer arm dynein light chain 1 protein (.1.2) AT1G78230 56 / 9e-08 Outer arm dynein light chain 1 protein (.1) AT5G22320 49 / 2e-05 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041988 [exp] 1406 / 0 AT3G17920 365 / 1e-111 Outer arm dynein light chain 1 protein (.1.2) Lus10038875 [exp] 49 / 3e-05 AT5G07280 1248 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10034873 [exp] 47 / 8e-05 AT3G03770 668 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10033407 [exp] 47 / 0.0001 AT3G03770 666 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10026651 [exp] 45 / 0.0002 AT5G61240 549 / 0.0 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10013308 [exp] 45 / 0.0004 AT5G22320 362 / 9e-122 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Lus10012022 [exp] 44 / 0.0008 AT5G06820 659 / 0.0 STRUBBELIG-receptor family 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G045300 [exp] 888 / 0 AT3G17920 917 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.015G036300 [exp] 859 / 0 AT1G48540 867 / 0.0 Outer arm dynein light chain 1 protein (.1.2) Potri.002G097800 [exp] 64 / 6e-10 AT1G78230 523 / 3e-178 Outer arm dynein light chain 1 protein (.1) Potri.019G119500 [exp] 50 / 1e-05 AT4G03260 521 / 3e-177 Outer arm dynein light chain 1 protein (.1.2) Potri.004G199200 [exp] 46 / 0.0001 AT5G22320 354 / 2e-118 Leucine-rich repeat (LRR) family protein (.1), Leucine-rich repeat (LRR) family protein (.2) Potri.012G139000 [exp] 44 / 0.0006 AT5G07280 1377 / 0.0 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10017994 pacid=23147918 polypeptide=Lus10017994 locus=Lus10017994.g ID=Lus10017994.BGIv1.0 annot-version=v1.0 ATGGCGATCGTCACCGGCGATCGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGCCTTCCGTGCGAGAGGCTCAAAGTTTGGGAGCTTAGAGGCTGTGATTT GTCCACTTCTGCTGCTAGAGGCTTGCTTGAGCTACGGCATACTCTGGAGAAGATCGTCTGCCACAATTCTACTGATGCTCTACGGCATGTGTTTGCGAGC AGGATTATGGACATCAAGGACTCTCCACAATGGAACAAGTTGACGTTTGTGTCATGCGCTTCCAATCGACTAATTTTGATGGACGAGTCTCTGCAACTTC TTCCTGCTGTCGAGACTCTTGATCTGAGTCGAAATAAGTTCTCTAAAGTTGACAATCTGCGGAAGTGCGTCAAATTGAAGCACCTGGATCTTGGATTCAA TCATCTGAGGAGAATTGATCCATTTCGCCAGGTGTCATGCAATCTTATTAGGCTTGTTTTAAGGAACAATGCATTGACCACGTTGCATGGCCTTGAGAAC TTGAAGTCACTTGAACACCTTGATGTCTCGTATAATATCGTCTCCAACTTTTTTGAGCTGGAGGTCCTTTCGAGCCTTCCGTCCCTTTGCAATTTGTGGC TGGAAGGAAATCCATTGTGTTGCGCTAGATGCTATCGAGCTCAAGTATTCAGCTATTTTTCATATCCGTACATTTTGAAGCTAGATAACAAGCCAATCAG CACAAGGGAGTACTGGGAGAGACATATCATGATCGCCAGCCGACACAAGCGACCTGCTAGCTTTGGGTTTTATTCTCCTGCTAAAGATGATGCTTTGGAA AATGGCTGTTTCAACAAGAAAAAGCAAAAGGTATCTCGTCTGGCCTCAATCAAGAGTAATGAAGACAGTATATCTTCTCTGTCCGATCAGGAATCTTCCT CTCACAATCTTGAAAATCAAAGCAAGGAAGAGAACACAAAATCTGATGATGAAGCTGAGATTTTCGATTTGATTAACAGAGTTGAACTCATGAAGAAGGA ACGCTCCTCTCTTTGGTTGAAAGAATTGAAGGAGTGGATGGATCCTGAACCTGTGAAGTCAGCGAATTCCAGTATCTATAATGCCCCCATGTCAGACACT TCAAAAGGAATCAGGGAAGAGAACAAAACAAGAGAGAAGCGTCAGGCAGAAGGGTCGAGATTTACCTCTGACTATCTTCAAGCTTCCGAAGACGAGACTA GCACCAATGTTTTTTATTCTGATAGTTCCTTTATGGACATGCATAGTGATTTACATGGTGGGACTGCTATAGAGGGTGCTCGAAGGAAGATGCTGAAGTC CAAGTATGAAGGGTTAACTTCTCCATCTATGCTATCTGAGAATGCACATCTTGATAACTCATCCATCCCGAGAGGCTGGGGGCTGGTTGAAAATGTTAGA TTATCACCATTGACCACCATAGATGATGCAACTGAATCTAATTCATCTTCGAATTTCCATGCGTCTCCACCTCATTATCAAAAGGACCTCTTACGCCGTC GCAATCACCTTGTGGAGGAAATTATGCAGTTTTCGGCGGGGTCCTATTCCATAGTATCATCTGATACAGATACAACTGGCAGTGAAGATGAGTTTTATGA TGTTGGGCATCCTATGTCTGAAGTTGATGGTGGATATCTGCAGACCGAAGAAAACTGTAATCCCAACCTTTCCAGGATATCACTTTCGGTAGGCAATTGT GAAAAGTGTGGCAAAGGAAATTATATGCATCATACAGGAAGTGACAAATGCTTACTTGATTCTAATTCTGAACAAACCTCTAGCGTATCAGAAATAGCAG ATATACAGCACAATGGTTCGGTTGCAGTCTCATACAATGGTGAAGTTCCTTGTTCTGCTGACCAAGAGGTTCATTGGGTGGAGAAGAGAAGAAACAGAAG GAAACCAAGAAGAAAATGTCAAATAGCTGAAAATTTAGTTGAGTGTACTGTGAGATCAGACAAGTCTAATGAAAGTTCAGATACTTTGGATGGCACACAA CAAATTCAAAGTGAGGAAATAGTTGAAGGAAATGGTATTCTTGAAGCCATTGATAAAAAGTGGTTGCAGACAAGTGCTTTCATGTCGGTACGTGCAACTG TTGAGAGATCTTCTGAAAATTCTGTAGAGAAACACTTCAATGAGACTGTTGCAGATTCTGCATGTAAGGAGACCTGTCTTTATTTCGTTTTCTGCAATTG TGTTCTTGAGCCTGAAGCATCAGCTAAAGAAAGTGAAGTTGTCTTAATCCGGAGTAGTGAGAACAAGTTGTATTTGATGCTTGTTGGTGTAGCATTGAAT GATACAGGAAATACTTTTACCACGTTACATTCACACAAACTTGAAGATGTTAGAGAAGTTACAACCGGCATTGGACTTCAGGTCGTGAGGGTAACTATCC AGAGGGAAGCAACTTACTTGTTTCTGACCAGGAGCATGGAGAAACTGTGGCGCCTCTTTTATACCTTGGATCTCTGTGGTTCCTCGACTAATGAGAATTG TTCATTACGAAGCTCGGAGCAGATTCAGCTTAAGCTGTTTGAACAGCAACTATGTGGCGGTTCAAGAATAAGCATATACCAATATTCAATGGTGCTTTTT AAAAAAGGTGCTTCGTGGGATCTGAGATCACTGTTTGTAGTTCAAGGCCATCTACTTTTGTGCACCGAGGACCTAAAGCAGTTAGGCATCGGTCTTGAGG ATCCACCTTCGACTGTCCCCTACTTCTCCCTGGACGCTCGCTGCTCGATCAACGATATTGTTGAACTGGTAATAGACACAGAAGAGAGCTGCTGCGTACT CTCGACTCTCCAAACAGTAGACACATCGATCAAAGGGAGATTTTTTAGCAAGAGTTGTCCTCGTGCAAGACGTTCGGAGTGGAAACTGAAGTGGTTCTCG TCGGAAAGCCTGTCAAATTTCGTGGGATTGGTTCATGCTAGCCATACGAAGTCTCCTCCTTTGCTTGTAAAATGTGTGCAATAG
AA sequence Show only first row Show all	>Lus10017994 pacid=23147918 polypeptide=Lus10017994 locus=Lus10017994.g ID=Lus10017994.BGIv1.0 annot-version=v1.0 MAIVTGDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLPCERLKVWELRGCDLSTSAARGLLELRHTLEKIVCHNSTDALRHVFAS RIMDIKDSPQWNKLTFVSCASNRLILMDESLQLLPAVETLDLSRNKFSKVDNLRKCVKLKHLDLGFNHLRRIDPFRQVSCNLIRLVLRNNALTTLHGLEN LKSLEHLDVSYNIVSNFFELEVLSSLPSLCNLWLEGNPLCCARCYRAQVFSYFSYPYILKLDNKPISTREYWERHIMIASRHKRPASFGFYSPAKDDALE NGCFNKKKQKVSRLASIKSNEDSISSLSDQESSSHNLENQSKEENTKSDDEAEIFDLINRVELMKKERSSLWLKELKEWMDPEPVKSANSSIYNAPMSDT SKGIREENKTREKRQAEGSRFTSDYLQASEDETSTNVFYSDSSFMDMHSDLHGGTAIEGARRKMLKSKYEGLTSPSMLSENAHLDNSSIPRGWGLVENVR LSPLTTIDDATESNSSSNFHASPPHYQKDLLRRRNHLVEEIMQFSAGSYSIVSSDTDTTGSEDEFYDVGHPMSEVDGGYLQTEENCNPNLSRISLSVGNC EKCGKGNYMHHTGSDKCLLDSNSEQTSSVSEIADIQHNGSVAVSYNGEVPCSADQEVHWVEKRRNRRKPRRKCQIAENLVECTVRSDKSNESSDTLDGTQ QIQSEEIVEGNGILEAIDKKWLQTSAFMSVRATVERSSENSVEKHFNETVADSACKETCLYFVFCNCVLEPEASAKESEVVLIRSSENKLYLMLVGVALN DTGNTFTTLHSHKLEDVREVTTGIGLQVVRVTIQREATYLFLTRSMEKLWRLFYTLDLCGSSTNENCSLRSSEQIQLKLFEQQLCGGSRISIYQYSMVLF KKGASWDLRSLFVVQGHLLLCTEDLKQLGIGLEDPPSTVPYFSLDARCSINDIVELVIDTEESCCVLSTLQTVDTSIKGRFFSKSCPRARRSEWKLKWFS SESLSNFVGLVHASHTKSPPLLVKCVQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48540			Outer arm dynein light chain 1...		Lus10017994 [exp]	0	1
AT3G17920			Outer arm dynein light chain 1...		Lus10041988 [exp]	1.0	0.9410
AT3G13235		DDI1	DNA-damage inducible 1, ubiqui...		Lus10020464 [exp]	4.0	0.8845
AT3G52200		LTA3	Dihydrolipoamide acetyltransfe...		Lus10008412 [exp]	4.8	0.8327
AT1G76850		SEC5A	exocyst complex component sec5...		Lus10040488 [exp]	7.4	0.8438
AT4G16070			Mono-/di-acylglycerol lipase, ...		Lus10016834 [exp]	8.0	0.8485
AT4G00840			DHHC-type zinc finger family p...		Lus10002694 [exp]	8.5	0.8473
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10010848 [exp]	9.1	0.8034
AT5G40450			unknown protein		Lus10022266 [exp]	10.0	0.8341
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10038383 [exp]	11.5	0.8710
AT1G69340			appr-1-p processing enzyme fam...		Lus10037119 [exp]	11.8	0.8561

Compare expression of checked genes

Lus10017994 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.