Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17810 687 / 0 PYD1 pyrimidine 1 (.1) AT5G23300 45 / 5e-05 PYRD pyrimidine d (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041990 [exp] 870 / 0 AT3G17810 686 / 0.0 pyrimidine 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G030600 [exp] 728 / 0 AT3G17810 709 / 0.0 pyrimidine 1 (.1) Potri.012G043300 [exp] 489 / 4e-175 AT3G17810 468 / 9e-167 pyrimidine 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0036 [flax] [poplar] TIM_barrel PF01180 [flax] [poplar] DHO_dh Dihydroorotate dehydrogenase
Representative CDS sequence Show only first row Show all	>Lus10017995 pacid=23148014 polypeptide=Lus10017995 locus=Lus10017995.g ID=Lus10017995.BGIv1.0 annot-version=v1.0 ATGGCGTCCTTGTGTTTCACGTCTCAACCGCTAGGCTACCGCCGGAATCCCAGGTTGGTTCAGAATCGGCGCGGAGTCGGTTTCTGCAACTTCAAAGCTC TTGCTGTCGGAGGGAATGGAAGCGGTGCTGAGCCGGATCTGAGCGTGACCGTCAACGGATTGAAAATGCCTAATCCTTTCGTGATCGGTTCTGGTCCGCC AGGGACGAACTATACAGTGATGAAGCGTGCTTTCGACGAAGGCTGGGGTGCTGTTATTGCCAAAACTGTGTCACTAGATGCAGCTAAAGTGATCAACGTT ACTCCTCGGTACGCCAAGCTACGTGCGAATGGATCAGCCAAAGGTCAGATAATTGGGTGGGAGAACATCGAGCTGATAAGCGACAGGCCATTGGAGATAA TGCTGCAAGAATTCAAGCAGTTGAAGGAAGAGTATCCAGATAGGATTTTGATTGCTTCAATCATGGAGGAGTACAACAAAGCTGGTTGGGAGGAGCTCAT CGATCGCGTGGAGCAAACTGGAGTTGATGCTCTTGAAATCAATTTCTCTTGTCCTCATGGTATGCCGGAGCGTAAGATGGGTGCAGCAGTTGGGCAAGAC TGTGCACTATTGGAAGAAGTTTGCGGATGGATAAATGCTAAAGCTACTGTTCCTGTCTGGGCAAAGATGACTCCTAATATCACTGATATAACAGAGCCAG CTAGGGTGGCTCTAAAATCTGGTTGTGAGGGCATAGCAGCTATAAACACCATCATGAGTGTAATGGGAATCAATCTCAAAACTTTACGACCCGAGCCCAG TGTTGAGGGATATTCAACTCCTGGCGGGTACTCTTCGAAAGCAGTGCACCCCATTGCTCTTGCGAAAGTAATGAACATCGCCAGAATGATGAAGGCAGAG TTTAACGACGACCACTACTCACTTTCCGGCATTGGAGGCGTCGAGACGGGTGGTGATGCAGCTGAGTTCATTCTCCTCGGCGCAAGTACAGTTCAGGTGT GCACGGGAGTGATGATCCATGGATATCCCGTGGTTAAGAGACTGTGCGAGGAGCTCAAGGACTTCATGAGAACCCACAATTTCTCATCCATCGAAGACTT CCGAGGAGCGTCGTTGGAGTACTTCACGACGCACACGGACTTGGTGAGACGGCAGCAGGAGGCCATTCAGCAGAGGAAGGCAGTGAGGAAAGGGCTAAAG TCTGATAAGGAATGGACTGGAGATGGGTTCGTGGAGGAGACTGAGAGCATGGTTTCCAATTGA
AA sequence Show only first row Show all	>Lus10017995 pacid=23148014 polypeptide=Lus10017995 locus=Lus10017995.g ID=Lus10017995.BGIv1.0 annot-version=v1.0 MASLCFTSQPLGYRRNPRLVQNRRGVGFCNFKALAVGGNGSGAEPDLSVTVNGLKMPNPFVIGSGPPGTNYTVMKRAFDEGWGAVIAKTVSLDAAKVINV TPRYAKLRANGSAKGQIIGWENIELISDRPLEIMLQEFKQLKEEYPDRILIASIMEEYNKAGWEELIDRVEQTGVDALEINFSCPHGMPERKMGAAVGQD CALLEEVCGWINAKATVPVWAKMTPNITDITEPARVALKSGCEGIAAINTIMSVMGINLKTLRPEPSVEGYSTPGGYSSKAVHPIALAKVMNIARMMKAE FNDDHYSLSGIGGVETGGDAAEFILLGASTVQVCTGVMIHGYPVVKRLCEELKDFMRTHNFSSIEDFRGASLEYFTTHTDLVRRQQEAIQQRKAVRKGLK SDKEWTGDGFVEETESMVSN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17810		PYD1	pyrimidine 1 (.1)		Lus10017995 [exp]	0	1
AT5G17450		HIPP21	heavy metal associated isopren...		Lus10028531 [exp]	3.5	0.9446
AT4G20260		ATPCAP1	ARABIDOPSIS THALIANA PLASMA-ME...		Lus10036243 [exp]	3.5	0.9534
AT2G26670		GUN2, ATHO1, TE...	REVERSAL OF THE DET PHENOTYPE ...		Lus10005718 [exp]	4.7	0.9453
AT2G32150			Haloacid dehalogenase-like hyd...		Lus10004914 [exp]	4.9	0.9496
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Lus10007247 [exp]	8.4	0.9557
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006502 [exp]	8.4	0.9508
AT5G63450		CYP94B1	"cytochrome P450, family 94, s...		Lus10033852 [exp]	8.9	0.9419
AT3G60340			alpha/beta-Hydrolases superfam...		Lus10004375 [exp]	9.3	0.9538
AT1G09195			unknown protein		Lus10031400 [exp]	15.3	0.9335
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Lus10007974 [exp]	16.2	0.9125

Compare expression of checked genes

Lus10017995 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.