Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48480 733 / 0 RKL1 receptor-like kinase 1 (.1) AT3G17840 717 / 0 RLK902 receptor-like kinase 902 (.1) AT5G16590 607 / 0 LRR1 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) AT3G02880 586 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G08680 478 / 1e-161 Leucine-rich repeat protein kinase family protein (.1.2) AT5G05160 454 / 5e-152 REDUCED IN LATERAL GROWTH1 (RUL1) REDUCED IN LATERAL GROWTH1, Leucine-rich repeat protein kinase family protein (.1) AT1G68400 423 / 1e-139 leucine-rich repeat transmembrane protein kinase family protein (.1) AT2G36570 409 / 3e-134 Leucine-rich repeat protein kinase family protein (.1) AT5G24100 396 / 5e-130 Leucine-rich repeat protein kinase family protein (.1) AT2G26730 370 / 2e-119 Leucine-rich repeat protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004040 [exp] 681 / 0 AT1G48480 694 / 0.0 receptor-like kinase 1 (.1) Lus10031350 [exp] 629 / 0 AT1G48480 625 / 0.0 receptor-like kinase 1 (.1) Lus10010973 [exp] 592 / 0 AT1G48480 621 / 0.0 receptor-like kinase 1 (.1) Lus10021673 [exp] 509 / 9e-174 AT5G58300 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10041992 [exp] 482 / 6e-169 AT3G17840 343 / 2e-115 receptor-like kinase 902 (.1) Lus10034446 [exp] 496 / 4e-168 AT5G58300 847 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10019113 [exp] 494 / 2e-167 AT5G58300 848 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Lus10002299 [exp] 473 / 5e-164 AT1G48480 433 / 5e-149 receptor-like kinase 1 (.1) Lus10031909 [exp] 464 / 4e-159 AT1G48480 441 / 2e-150 receptor-like kinase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G035500 [exp] 853 / 0 AT1G48480 731 / 0.0 receptor-like kinase 1 (.1) Potri.012G044600 [exp] 819 / 0 AT1G48480 719 / 0.0 receptor-like kinase 1 (.1) Potri.004G086100 [exp] 684 / 0 AT5G16590 655 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.017G130600 [exp] 671 / 0 AT5G16590 649 / 0.0 Leucine rich repeat protein 1, Leucine-rich repeat protein kinase family protein (.1) Potri.013G158800 [exp] 514 / 9e-176 AT5G58300 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G131500 [exp] 514 / 2e-175 AT5G58300 860 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.016G139200 [exp] 504 / 8e-172 AT5G58300 691 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.019G062100 [exp] 486 / 7e-164 AT5G58300 750 / 0.0 Leucine-rich repeat protein kinase family protein (.1.2) Potri.001G095200 [exp] 455 / 9e-153 AT4G23740 751 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.012G033200 [exp] 452 / 2e-151 AT4G23740 656 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10017996 pacid=23147944 polypeptide=Lus10017996 locus=Lus10017996.g ID=Lus10017996.BGIv1.0 annot-version=v1.0 ATGGAGATTACCCAGCTGCTGCTCATTTCCCTATGTTGCATCCTCCTCTCCTCCTCACTTCTACCCGTTTCGAACTCAGATCTCGCCGCCGACCGAGCAG CCCTCATCACCCTCCGCTCCGCCGTCGGCGGCCGTACGACCTATTTCTGGAACGCCACCCAGCAGAGCCCCTGCAAATGGGCCGGAATCAAGTGTGAGCT GAACAGAGTGACAGTCCTCCGACTCCCAGGCGTCGCCCTCGCCGGAGAGCTTCCCGCCAGAGTGTTCTCCAACTTGACTCAGCTCCGCACTCTCAGTCTT CGCCTCAACGCTCTCACCGGTCAGCTCCCTTCAGATCTAGCTAGCTGCACTCGTCTCCGTAACTTGTACCTTCAGGGGAACTCCTTCTCCGGCGAGATCC CCGACTTCCTTTTCTCCTTCCGCGACCTGGTCCGTCTCAACCTTGCCGACAACAACTTCACCGGAAACTTCCCGAACGGGTTCGATAACTTGACCCGGTT GAAGACCCTGTTCGTCGAAAACAACCGTCTCTCCGGGTCGATTCCGGGTCTCAAATTCGGGAAGCTTGAGCACTTCAACGCCTCCAACAATCTGTTGAAC GGCTCAATTCCGCAGAGGCTAAGGTCATTCGATTCGGCGTCGTTTTCGGGGAACTCCCTCTGCGGGCAGCCTCTCGACGCTTGCAATGTCGACAGCGCGC GTGGGACCGTCGTGGTACCCAGCTCGCCGGCGTCCGGGGAATCACCTACCGGGAGAAAACGGCGGCACCTCTCCGGTGGTGCAATCGCCGGGATTGTAAT CGGAACCCTAATTGGATTTTGTTTACTCGTCGCGATTTTGGTACTTCTGTCGAGGAAGATTAGCAGTCGGAAAAACTCGAGATCGATGGATATCGGGTCG TTGAAGCCACAGGACTTAGAGATAATGGCGGAGAAGCCAATGGTGGATAGCAATGGGAACGGCTACTCCGTTGCCGCGGCGGCCGTGGCGGCAATGGTTG GGGGCGGTGGCAAAGATGGTAATAATGGTGGAACTGTGGGGGCAAAGAAGTTGGTCTTCTTTGGGAAGACCAGTAGGGTGTTTGACTTGGAGGATTTGTT GAGAGCTTCTGCTGAGGTTTTGGGGAAAGGAACGTTTGGGACTGCTTACAAGGCAGTATTGGAGTTTGGAACTGTGGTGGCTGTGAAGAGATTGAGGGAT GTGATCGTATCGGAAGGAGAATTCAGGCAGAAGATTGAGTTTGTTGGTGCCATGGATCATCAGAGCTTGGTTCCTTTGAGGGCTTATTACTATAGTATGG ATGAGAAGCTCATTGTTTATGATTACATGTCTATGGGAAGCTTGTCTGCTCTTCTTCATGGCAACAAAAGTGCTGGGAGGACTCCACTGAACTGGGAAAT CCGATCTTCGATCGCCCTAGGAGCGGCTCGTGGGATCGAGTACCTTCACTCGCAAGGCAACGAGGTTTCCCACGGAAACATCAAGTCCTCCAACATCCTC CTCACTGGAAACTACGAAGCTCGAGTCGCCGACTTCTTCCTCGCTCAACTCGTTAGCCCTTCGTCAACTCCCAACAGGGTCGCTGGGTACCGAGCACCGG AGGTCACAGATACACGCAGAGTCTCCCAGAAGGCTGATGTGTACAGCTTTGGAGTAATGCTGCTGGAGCTACTAACAGGAAAGGCCCCTGCGAATTCGAT TCTGAACGAAGAAGGCATCGATCTCCCTAGATGGGTGCAATCCACAGTGAAGGAGGAGTGGACATCGGAGGTGTTTGATCTCGAGCTCCTTCGATACCAG AGCGTCGAGGAAGAGATGGTTCAGCTGCTGCAGCTCGGAGTGGACTGTGCGGCTCAGTACCCTGACAACCGTCCTACAATGAGCGATGTCTCGGCTCGGA TAGAGGAGATTTGCAGGTCTTCCAGTGCTATAGATCCCCAGCCTGATGGAGATGAAAGCTCCCTGCTTTAG
AA sequence Show only first row Show all	>Lus10017996 pacid=23147944 polypeptide=Lus10017996 locus=Lus10017996.g ID=Lus10017996.BGIv1.0 annot-version=v1.0 MEITQLLLISLCCILLSSSLLPVSNSDLAADRAALITLRSAVGGRTTYFWNATQQSPCKWAGIKCELNRVTVLRLPGVALAGELPARVFSNLTQLRTLSL RLNALTGQLPSDLASCTRLRNLYLQGNSFSGEIPDFLFSFRDLVRLNLADNNFTGNFPNGFDNLTRLKTLFVENNRLSGSIPGLKFGKLEHFNASNNLLN GSIPQRLRSFDSASFSGNSLCGQPLDACNVDSARGTVVVPSSPASGESPTGRKRRHLSGGAIAGIVIGTLIGFCLLVAILVLLSRKISSRKNSRSMDIGS LKPQDLEIMAEKPMVDSNGNGYSVAAAAVAAMVGGGGKDGNNGGTVGAKKLVFFGKTSRVFDLEDLLRASAEVLGKGTFGTAYKAVLEFGTVVAVKRLRD VIVSEGEFRQKIEFVGAMDHQSLVPLRAYYYSMDEKLIVYDYMSMGSLSALLHGNKSAGRTPLNWEIRSSIALGAARGIEYLHSQGNEVSHGNIKSSNIL LTGNYEARVADFFLAQLVSPSSTPNRVAGYRAPEVTDTRRVSQKADVYSFGVMLLELLTGKAPANSILNEEGIDLPRWVQSTVKEEWTSEVFDLELLRYQ SVEEEMVQLLQLGVDCAAQYPDNRPTMSDVSARIEEICRSSSAIDPQPDGDESSLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10017996 [exp]	0	1
AT3G51670			SEC14 cytosolic factor family ...		Lus10001269 [exp]	1.4	0.9247
AT3G17840		RLK902	receptor-like kinase 902 (.1)		Lus10041992 [exp]	1.4	0.9329
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10041991 [exp]	2.4	0.9237
AT1G21880		LYM1	lysm domain GPI-anchored prote...		Lus10025643 [exp]	2.8	0.9155
AT3G51670			SEC14 cytosolic factor family ...		Lus10012219 [exp]	3.7	0.8980
AT3G13060		ECT5	evolutionarily conserved C-ter...		Lus10015778 [exp]	4.9	0.8942
AT5G55730		FLA1	FASCICLIN-like arabinogalactan...		Lus10016617 [exp]	7.7	0.8813
AT1G61170			unknown protein		Lus10018461 [exp]	9.5	0.8942
AT5G44500			Small nuclear ribonucleoprotei...		Lus10038421 [exp]	10.1	0.9003
AT2G45340			Leucine-rich repeat protein ki...		Lus10030279 [exp]	11.5	0.8641

Compare expression of checked genes

Lus10017996 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.