Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G52450 507 / 7e-177 MATE efflux family protein (.1) AT2G34360 483 / 7e-168 MATE efflux family protein (.1) AT1G73700 467 / 2e-161 MATE efflux family protein (.1) AT1G71140 346 / 4e-114 MATE efflux family protein (.1) AT1G15170 336 / 5e-110 MATE efflux family protein (.1) AT1G15150 335 / 1e-109 MATE efflux family protein (.1) AT2G04040 327 / 1e-106 ATDTX1 detoxification 1, MATE efflux family protein (.1) AT1G66760 327 / 1e-106 MATE efflux family protein (.1.2) AT1G15160 326 / 4e-106 MATE efflux family protein (.1) AT2G04070 322 / 9e-105 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041994 [exp] 814 / 0 AT5G52450 608 / 0.0 MATE efflux family protein (.1) Lus10029668 [exp] 506 / 1e-177 AT5G52450 490 / 6e-172 MATE efflux family protein (.1) Lus10001318 [exp] 423 / 7e-144 AT5G52450 507 / 1e-177 MATE efflux family protein (.1) Lus10019492 [exp] 395 / 3e-133 AT5G52450 485 / 6e-169 MATE efflux family protein (.1) Lus10009132 [exp] 365 / 4e-121 AT2G04040 489 / 9e-171 detoxification 1, MATE efflux family protein (.1) Lus10029694 [exp] 356 / 1e-117 AT1G15170 563 / 0.0 MATE efflux family protein (.1) Lus10042732 [exp] 355 / 2e-117 AT1G15170 562 / 0.0 MATE efflux family protein (.1) Lus10028540 [exp] 368 / 3e-117 AT1G15170 537 / 0.0 MATE efflux family protein (.1) Lus10018134 [exp] 361 / 1e-114 AT1G15170 542 / 0.0 MATE efflux family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G051900 [exp] 600 / 0 AT5G52450 644 / 0.0 MATE efflux family protein (.1) Potri.010G116700 [exp] 485 / 2e-168 AT5G52450 558 / 0.0 MATE efflux family protein (.1) Potri.006G170900 [exp] 484 / 4e-168 AT5G52450 486 / 2e-169 MATE efflux family protein (.1) Potri.006G171240 [exp] 484 / 7e-168 AT5G52450 486 / 3e-169 MATE efflux family protein (.1) Potri.010G116900 [exp] 384 / 8e-129 AT1G15170 598 / 0.0 MATE efflux family protein (.1) Potri.004G093400 [exp] 359 / 4e-119 AT1G71140 482 / 8e-168 MATE efflux family protein (.1) Potri.010G117000 [exp] 357 / 6e-118 AT1G15170 545 / 0.0 MATE efflux family protein (.1) Potri.008G126500 [exp] 342 / 2e-112 AT1G15170 546 / 0.0 MATE efflux family protein (.1) Potri.017G120600 [exp] 342 / 2e-112 AT1G66760 468 / 2e-162 MATE efflux family protein (.1.2) Potri.004G094900 [exp] 340 / 8e-112 AT1G71140 503 / 3e-176 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [flax] [poplar] MviN_MATE PF01554 [flax] [poplar] MatE MatE
Representative CDS sequence Show only first row Show all	>Lus10017998 pacid=23147913 polypeptide=Lus10017998 locus=Lus10017998.g ID=Lus10017998.BGIv1.0 annot-version=v1.0 ATGGCGGGAGGATCAGGTGCCACGTCAGCGGCGGTGGAGTCCGAACAGAGCGTGCCGCTGATTAATGGCACGGCGGCGGCGGAGAAGGAGGAGAGGCTGA GCAAGGTGGTGATGGAGGAAGTGAAGAGGCAAGTGTGGCTGGCGGGGCCGATGATAGCGGTGAGCTTGCTTCAGTACAGTTTGAACTTAATATCGGTGAT GTTCGTGGGGCATCTGGGTGAACTAAGCTTGTCCTCTGCTTCCATGGCTACTTCTTTCGCTACTGTCACTGGCTTCAGCTTACTGTTAGGAATGGCGAGT GCACTAGACACATTTTGCGGCCAAGCCTACGGAGCCAGACAGTACCACACAATGAGCATCCACATGCAAAGAGCCATGTTGGTCCTCCTGGTCATAAGCA TTCCCTTGTCCGTCATCTGGGCGAACACGGCCCACATCCTGATCGCGGCCGGGCAACAACAGGACATCGCAGAGGGGGCAGGGACCTACGCCACGTTCAT GATCCCCAGCATCTTCGCCTACGCGATCCTACAGTGCCAGGTCAAGTTCTTGCAGACTCAGAGCATCGTGTTCCCCATGGTGCTCTGCTCGGTTGTGGCC GCCCTCCTCCACCTCCTCCTGTGTTGGCTCCTCGTGTTTAACTCCGCCATGGGAGCTCGTGGGGCCGCGATTTCTAACTCGATCTCGAATTGGGTTAATG TGGTGTTGTTTTCCTTGTACATCAAGTTTTCTCCCTCTTGTGCCAAGACTTGGACCGGGTTTTCTAAAGAGGCTTTGGTCGGTATTTGGACTTTCTTGAA GCTTGCTATTCCTTCAGCCTTCATGGTCTGCTTGGAAATGTGGTCATTCGAGATGTTGGTTCTTGCTTCTGGCCTTCTGCCTAACCCGAAACTTGAGACA TCTGTGCTTTCGATCAGCCTCAACACAGCAACAACAGTATGGATGATCGCCTACGGACTCAGTGCTGCTGGAAGGTCAGAGTGGCTCGCTCGCTTTTCAA TCTCCGATTACGAGATTTCAAACCGATTACAATTCGCTAACACATTTTCAAAAAAAACCGTGCAGCACAAGGGTGTCGAACGAACTGGGAGCAGGACAGC CAGAGCGAGCACGAATGGCGGGGTATGTGTGGTGCTAGGAATGGCCGTCACAGAGGGGCTAGTGGTGGGAGTGATCTTGTTCTCGATACGCAACGTTTGG GGCTACGCTTATAGCAACGACCAGCCCGTGATCGAATATGTAGCTCAAATGCTTCCCATCGTGGCCATAGCACACTTCCTAGACTCCCTCCAGTGCGTTT TTTCAGGGACTGCTAGAGGATGTGGTTGGCAAGAGATTGGAGCATACATAAATCTTGGGTCTTACTACATAGTGGGAATTCCTTGTGGGATTTTGCTGGC ATTTGTTCTTCACATCGGTGGAAAGGGTTTGTATTTGGGGATCATATGTGCTCTGGTGGTGGAAACGATGTCGCTTTCGATCCTTATCGCTCGTACTAAT TGGGGACATGAAGCGAAGAAGGCCGGAGATAGAATTCACGAAACAATGCCAATAGAGAGATTGTCGTGA
AA sequence Show only first row Show all	>Lus10017998 pacid=23147913 polypeptide=Lus10017998 locus=Lus10017998.g ID=Lus10017998.BGIv1.0 annot-version=v1.0 MAGGSGATSAAVESEQSVPLINGTAAAEKEERLSKVVMEEVKRQVWLAGPMIAVSLLQYSLNLISVMFVGHLGELSLSSASMATSFATVTGFSLLLGMAS ALDTFCGQAYGARQYHTMSIHMQRAMLVLLVISIPLSVIWANTAHILIAAGQQQDIAEGAGTYATFMIPSIFAYAILQCQVKFLQTQSIVFPMVLCSVVA ALLHLLLCWLLVFNSAMGARGAAISNSISNWVNVVLFSLYIKFSPSCAKTWTGFSKEALVGIWTFLKLAIPSAFMVCLEMWSFEMLVLASGLLPNPKLET SVLSISLNTATTVWMIAYGLSAAGRSEWLARFSISDYEISNRLQFANTFSKKTVQHKGVERTGSRTARASTNGGVCVVLGMAVTEGLVVGVILFSIRNVW GYAYSNDQPVIEYVAQMLPIVAIAHFLDSLQCVFSGTARGCGWQEIGAYINLGSYYIVGIPCGILLAFVLHIGGKGLYLGIICALVVETMSLSILIARTN WGHEAKKAGDRIHETMPIERLS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G52450			MATE efflux family protein (.1...		Lus10017998 [exp]	0	1
AT5G61340			unknown protein		Lus10015723 [exp]	7.3	0.6817
AT2G23420		NAPRT2	nicotinate phosphoribosyltrans...		Lus10009367 [exp]	14.8	0.7843
AT1G67310	CAMTA		Calmodulin-binding transcripti...		Lus10011352 [exp]	15.0	0.7765
AT5G01720			RNI-like superfamily protein (...		Lus10012214 [exp]	15.9	0.7159
AT3G58750		CSY2	citrate synthase 2 (.1)		Lus10031384 [exp]	16.3	0.7648
AT1G77210		AtSTP14	sugar transport protein 14, su...		Lus10009714 [exp]	21.4	0.7776
AT4G09890			Protein of unknown function (D...		Lus10028690 [exp]	23.7	0.6424
AT5G47040		LON2	lon protease 2 (.1)		Lus10003009 [exp]	27.2	0.7291
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10038582 [exp]	29.7	0.7276
AT5G05700		ATATE1, DLS1, A...	DELAYED LEAF SENESCENCE 1, arg...		Lus10004392 [exp]	35.2	0.7586

Compare expression of checked genes

Lus10017998 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.