Plant FIBer expression Database

Lus10017999 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G18060 244 / 8e-82 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10041995
[exp]
426 / 9e-153 AT1G18060 271 / 4e-92 unknown protein
Lus10012667
[exp]
247 / 2e-82 AT1G18060 204 / 7e-66 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.012G052300
[exp]
275 / 3e-93 AT1G18060 295 / 1e-101 unknown protein
PFAM info
Representative CDS sequence
>Lus10017999 pacid=23147982 polypeptide=Lus10017999 locus=Lus10017999.g ID=Lus10017999.BGIv1.0 annot-version=v1.0
ATGGCCGTATCTCTCCAATCGGTCGCCGCCGTCACTTCACGGCAAGTATCCGTTGCCACCATTCATCATCCTCTTCCCTCTCAACCGCTTCCATCCAGAC
TCAAATTCCCCGCCATTTCCGCTCCTCGCCGCCATTTTCTCGCGGTGAAGAACAGAGCTACTCTGGACGAGAAAGACCCGATCGTAGCTGAAGAAGAAGA
GCTCCAATCTTCCGAATCCAACGACCGAGTTGCTGAGAAGGTGAAACTGCTGAAGGAAGCTGCAAAGACGAAGAAAGTCGCAGCGGGGGAGATTTTGGAA
GCTTTAGCAGTGATTGAAAAGTCCAAGATTGATCCCTCTGGTTTCCTTCAAACTCTCGGCGGCGATCAATCCCCCGGCCGCACTTGGATGCTCGTCTTCA
CCGCTGAGAAGCAATACAAGAGTGGCAAGTATTTCCCCATTACTGCAGTCCAGAGGTTTGATGCTGCTGGCGAGAGGATTGAGAACGGAGTGTATCTCGG
GCCACTCGGATGGCTCACATTCGAAGGGAAGCTCGCGTGGACCAAGAATAGGGTATTGCCATTCATCTTTGAGCGAGTACGCATCAAGATAGGACCGTTT
AACCCTCTCGAGATCAGACTCGGGCAGGAAGGAGATAGGGAACCCACCATCAAGAGCGATCCTTTCTTTGTCTGGTTTTATATCGACGAGGAGATTGCTG
TCGCTAGAGGTAGGAGTGGCGGCACTGCTTTCTGGTGCAGGTGCCGCCGTGTTCCTTCCTGA
AA sequence
>Lus10017999 pacid=23147982 polypeptide=Lus10017999 locus=Lus10017999.g ID=Lus10017999.BGIv1.0 annot-version=v1.0
MAVSLQSVAAVTSRQVSVATIHHPLPSQPLPSRLKFPAISAPRRHFLAVKNRATLDEKDPIVAEEEELQSSESNDRVAEKVKLLKEAAKTKKVAAGEILE
ALAVIEKSKIDPSGFLQTLGGDQSPGRTWMLVFTAEKQYKSGKYFPITAVQRFDAAGERIENGVYLGPLGWLTFEGKLAWTKNRVLPFIFERVRIKIGPF
NPLEIRLGQEGDREPTIKSDPFFVWFYIDEEIAVARGRSGGTAFWCRCRRVPS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT1G18060 unknown protein Lus10017999
[exp]
0 1
AT3G02730 TRXF1, ATF1 thioredoxin F-type 1 (.1) Lus10026999
[exp]
1.0 0.9751
AT4G03280 PGR1, PETC PROTON GRADIENT REGULATION 1, ... Lus10039739
[exp]
2.8 0.9740
AT2G39730 RCA rubisco activase (.1.2.3) Lus10000518
[exp]
4.9 0.9519
AT1G73885 unknown protein Lus10005112
[exp]
4.9 0.9625
AT4G03280 PGR1, PETC PROTON GRADIENT REGULATION 1, ... Lus10018521
[exp]
5.2 0.9702
AT5G36700 ATPGLP1, 2-PHOS... 2-phosphoglycolate phosphatase... Lus10042429
[exp]
5.7 0.9659
AT3G63140 CSP41A chloroplast stem-loop binding ... Lus10006931
[exp]
5.9 0.9648
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Lus10041904
[exp]
7.0 0.9591
AT4G25910 ATCNFU3, NFU3 NFU domain protein 3 (.1) Lus10001439
[exp]
7.7 0.9285
AT5G66190 ATLFNR1 ferredoxin-NADP\(+\)-oxidoredu... Lus10028451
[exp]
7.9 0.9549

Lus10017999 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.