Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18070 792 / 0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) AT5G60390 293 / 2e-93 GTP binding Elongation factor Tu family protein (.1.2.3) AT1G07940 293 / 2e-93 GTP binding Elongation factor Tu family protein (.1.2) AT1G07930 293 / 2e-93 GTP binding Elongation factor Tu family protein (.1.2) AT1G07920 293 / 2e-93 GTP binding Elongation factor Tu family protein (.1) AT5G10630 295 / 3e-91 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) AT4G20360 130 / 2e-32 AtRab8D, AtRABE1b RAB GTPase homolog E1B (.1) AT4G02930 111 / 6e-26 GTP binding Elongation factor Tu family protein (.1) AT5G08650 57 / 2e-08 Small GTP-binding protein (.1) AT1G35550 52 / 4e-08 elongation factor Tu C-terminal domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041996 [exp] 1040 / 0 AT1G18070 801 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10009038 [exp] 702 / 0 AT1G18070 654 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Lus10040378 [exp] 287 / 5e-91 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10023497 [exp] 287 / 5e-91 AT1G07940 885 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10019918 [exp] 287 / 6e-91 AT1G07920 891 / 0.0 GTP binding Elongation factor Tu family protein (.1) Lus10020153 [exp] 282 / 2e-86 AT5G10630 774 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2) Lus10026952 [exp] 282 / 1e-82 AT4G31390 878 / 0.0 Protein kinase superfamily protein (.1.2) Lus10023174 [exp] 265 / 2e-82 AT1G07940 866 / 0.0 GTP binding Elongation factor Tu family protein (.1.2) Lus10026488 [exp] 238 / 2e-72 AT1G07920 797 / 0.0 GTP binding Elongation factor Tu family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G062500 [exp] 853 / 0 AT1G18070 806 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.013G093400 [exp] 847 / 0 AT1G18070 797 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3) Potri.008G043100 [exp] 292 / 7e-93 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042700 [exp] 292 / 7e-93 AT5G60390 857 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218600 [exp] 291 / 1e-92 AT5G60390 888 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.008G042500 [exp] 290 / 3e-92 AT5G60390 856 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G219500 [exp] 288 / 2e-91 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218800 [exp] 288 / 2e-91 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.010G218700 [exp] 288 / 2e-91 AT5G60390 891 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3) Potri.006G130900 [exp] 285 / 3e-90 AT5G60390 864 / 0.0 GTP binding Elongation factor Tu family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00009 [flax] [poplar] GTP_EFTU Elongation factor Tu GTP binding domain CL0575 [flax] [poplar] EFTPs PF03144 [flax] [poplar] GTP_EFTU_D2 Elongation factor Tu domain 2 CL0575 [flax] [poplar] PF03143 [flax] [poplar] GTP_EFTU_D3 Elongation factor Tu C-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018000 pacid=23147940 polypeptide=Lus10018000 locus=Lus10018000.g ID=Lus10018000.BGIv1.0 annot-version=v1.0 ATGGCCCGAGTTAGAGCGGGTGTTGTCCCCTCTCCAGTGGCGTGGGCATGGTGCCCATGCTTCAGGGCCTCCATTGGGCTTGGTTCATCGGGGCTGATCA TGACTTCGCCCCCTGGTGGCTTAGTCTGTTGGGCCTGCCATTTTGAGGCCACGAGCTCTATTTCAGAGCTTGTTAACCATCTTCAACATATTGAAGAGGA GATCCGTGCTTTGCAGCTTGATTCTGCAAGTGAGGAGAATACTGGAGCCACAAATCCAGAAGGGGTGAAGGTTGATCAGGTTGACGAGGTGGATAAAATG GATGAAGATTCAGCACCTAATGATACCGTGCATGCTGTAGAGGCACCACAAGCTGATGTAGAAGTGTCACATAGATCTGTACCAGCACCACATGTGGAAG AACCAGCTAAGGATACGATCGAGAATAGCAAGCGCCACTTGAATGTTGTCTTTATTGGACATGTTGATGCTGGCAAGTCCACCACTGGGGGCCAGATACT GTTTCTCAGTGGCCAGGTGGATGATCGTACGATTCAGAAGTATGAGAAAGAAGCCAAGGATAAAAGTAGAGAAAGCTGGTATATGGCGTACATCATGGAC ACAAATGAAGAGGAGAGACTCAAGGGTAAAACTGTTGAGGTTGGAAGAGCTCATTTTGAGACAGAAACAACCAGATTCACCATTTTGGATGCTCCTGGCC ACAAAAGTTATGTTCCAAATATGATAAGCGGAGCGTCTCAGGCTGACATTGGGGTTCTTGTGATTTCTGCTCGCAAAGGTGAATTTGAAACTGGATACGA GAGAGGTGGCCAGACCCGCGAACATGTTCAGCTTGCCAAAACCTTGGGTGTTTCTAAGCTGCTTGTTGTCGTAAACAAGATGGATGATCCTACAGTAAGT TGGTCAAAAGAAAGGTATGATGAAATTGAATCAAAGATGGTACCCTTCCTCAAGACTTCTGGTTACAATGTGAAGAAAGATGTTGTCTTCCTACCCATTT CTGGTCTTATTGGGGCAAACATGAAGAACAAAATGGATAAAAGCATATGTTCTTGGTGGGATGGCCCTTGTCTGTTTGAAGCTCTTGATCACATCGAAGT TCCTCTTCGTGACCCTAATGGTCCTTTCAGGATGCCCATCATTGATAAATTTAAAGACATGGGAACTGTTGTCATGGGAAAGGTGGAAGCTGGTAGTGTG ACTGAAGGCGACTCTTTGTTGGTGATGCCAAACAAGACTCAGGTGAAAGTAATTGGAGTGTATATCGATGAAAATAAGGTCAGACGAGCAGGCCCAGGGG AGAACCTCCGGGTCAGGTTGTCTGGAATAGACGATGAAGATATATTAGCTGGCTTCGTACTGTCCAGCATTGCGAGGCCTATAGCTGGAGTAACTGAGTT TATCGCTCAGTTGCAGATCCTCGAGCTGCTGGATAATGCCATTTTTACTGCTGGTTACAAGGCTGTTTTGCACATCCATGCTGTGGTCGAGGAGTGCGAG ATTACCGAGTTGATTGAGCAAGTCGATCCAAAGACGAGGAAACCTATGAAGAAGAAACCTCTTTTCGTGAAGAATGGTGCAATCATCAAATGCCGTATTC AGGTCAACAGCGTTATTTGTGTAGAGGCCTTCTCAGAATTTCCGCAACTCGGTCGATTCACTCTTCGCACTGAGGGGAAGACAATTGCAGTTGGGAAAGT CAACAAACTTTCGACAGGTTCAGCTTAA
AA sequence Show only first row Show all	>Lus10018000 pacid=23147940 polypeptide=Lus10018000 locus=Lus10018000.g ID=Lus10018000.BGIv1.0 annot-version=v1.0 MARVRAGVVPSPVAWAWCPCFRASIGLGSSGLIMTSPPGGLVCWACHFEATSSISELVNHLQHIEEEIRALQLDSASEENTGATNPEGVKVDQVDEVDKM DEDSAPNDTVHAVEAPQADVEVSHRSVPAPHVEEPAKDTIENSKRHLNVVFIGHVDAGKSTTGGQILFLSGQVDDRTIQKYEKEAKDKSRESWYMAYIMD TNEEERLKGKTVEVGRAHFETETTRFTILDAPGHKSYVPNMISGASQADIGVLVISARKGEFETGYERGGQTREHVQLAKTLGVSKLLVVVNKMDDPTVS WSKERYDEIESKMVPFLKTSGYNVKKDVVFLPISGLIGANMKNKMDKSICSWWDGPCLFEALDHIEVPLRDPNGPFRMPIIDKFKDMGTVVMGKVEAGSV TEGDSLLVMPNKTQVKVIGVYIDENKVRRAGPGENLRVRLSGIDDEDILAGFVLSSIARPIAGVTEFIAQLQILELLDNAIFTAGYKAVLHIHAVVEECE ITELIEQVDPKTRKPMKKKPLFVKNGAIIKCRIQVNSVICVEAFSEFPQLGRFTLRTEGKTIAVGKVNKLSTGSA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18070			Translation elongation factor ...		Lus10018000 [exp]	0	1
AT1G18070			Translation elongation factor ...		Lus10041996 [exp]	1.0	0.8711
AT1G12920		ERF1-2	eukaryotic release factor 1-2 ...		Lus10026003 [exp]	2.2	0.7285
AT4G01320		ATSTE24	Peptidase family M48 family pr...		Lus10005123 [exp]	2.4	0.7159
AT5G11010			Pre-mRNA cleavage complex II p...		Lus10014756 [exp]	3.9	0.7707
AT1G55900		TIM50, EMB1860	embryo defective 1860, Haloaci...		Lus10004414 [exp]	5.3	0.7347
AT3G56570			SET domain-containing protein ...		Lus10026538 [exp]	6.5	0.7128
AT3G54200			Late embryogenesis abundant (L...		Lus10040941 [exp]	6.9	0.7724
AT1G42480			unknown protein		Lus10030732 [exp]	24.2	0.6596
AT5G37475			Translation initiation factor ...		Lus10008317 [exp]	29.0	0.7024
AT1G20540			Transducin/WD40 repeat-like su...		Lus10034576 [exp]	29.2	0.6721

Compare expression of checked genes

Lus10018000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.