Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G18165 335 / 6e-117 MOS4 modifier of snc1,4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041997 [exp] 464 / 3e-168 AT3G18165 359 / 1e-126 modifier of snc1,4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041800 [exp] 396 / 4e-141 AT3G18165 344 / 1e-120 modifier of snc1,4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05700 [flax] [poplar] BCAS2 Breast carcinoma amplified sequence 2 (BCAS2)
Representative CDS sequence Show only first row Show all	>Lus10018001 pacid=23147974 polypeptide=Lus10018001 locus=Lus10018001.g ID=Lus10018001.BGIv1.0 annot-version=v1.0 ATGGCTCAGAGCAGTAGCGATGTCCTGATGCTGGAGGCCGCGCCGGAGTCGTCTCGTCCTTGGTCGAGCTCCTCCACTGCAGAAATCATCGACGCCTTGC CGTACATCGACGACGACTACGGAAACCCTTCCATCAAAGCCGAGGTGGACCGCCTAGTCGAGGAAGAGATGCGGCGGAGCTCCAAGAAACCGGCGGACTT CCTGAAGGACTTGCCTCCCTTGCCTAAGTTCAGTTTTGAGGACTATCCGATGCTCGGGAAAGAATATGAACGTGTGAGAGCCGGGAAGCCTCCCGTTGCC CTTGATTTTTCGAGATATGCACATTTGGATCAGCCTTCTGCGAATAAGGTAAATGATGAGACTGCTTGGAAGCAGTCACTTCAGAGAGCACAGCGTTTGC TGCAGCATCAAGTCTTAAGGATGGAGAATTTGGATTTGATGTCGAAATATGGCCCTGAAGTATGGAAACAGAACAACAGACAGCTAGAAGCAATGTTATC GAGGTTGCAGAAATTGGCTCAGGAACAAAATGAAAAGATTGAAGCTGTAAACCGCGAGAGGAAATACCATCAGCAAAATACTGCGTATGAGCTAAATGCT CTGTCTACACAGTGGAGAGAGCTGAGCTTGAAGAACATTGAAATTCAAGTAGCATGTGCTGGTATTCAGGGACAGATAGATGAGCTAAAGGGAGAAGCTG CGGCGAAGGGATGGAACTTGGAAGCTACCATAGAGAACGGTTCTCAGTTGCACTGA
AA sequence Show only first row Show all	>Lus10018001 pacid=23147974 polypeptide=Lus10018001 locus=Lus10018001.g ID=Lus10018001.BGIv1.0 annot-version=v1.0 MAQSSSDVLMLEAAPESSRPWSSSSTAEIIDALPYIDDDYGNPSIKAEVDRLVEEEMRRSSKKPADFLKDLPPLPKFSFEDYPMLGKEYERVRAGKPPVA LDFSRYAHLDQPSANKVNDETAWKQSLQRAQRLLQHQVLRMENLDLMSKYGPEVWKQNNRQLEAMLSRLQKLAQEQNEKIEAVNRERKYHQQNTAYELNA LSTQWRELSLKNIEIQVACAGIQGQIDELKGEAAAKGWNLEATIENGSQLH

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10018001 [exp]	0	1
AT3G18165		MOS4	modifier of snc1,4 (.1)		Lus10041997 [exp]	1.0	0.9441
AT4G00525			unknown protein		Lus10030386 [exp]	1.4	0.9057
AT1G08390			unknown protein		Lus10038152 [exp]	3.5	0.8145
AT2G45520			unknown protein		Lus10009304 [exp]	4.0	0.8309
AT5G49540			Rab5-interacting family protei...		Lus10016182 [exp]	4.5	0.7852
AT2G44680		CKB4	casein kinase II beta subunit...		Lus10028159 [exp]	5.2	0.8370
AT1G05430			unknown protein		Lus10010563 [exp]	5.8	0.7674
AT4G39150			DNAJ heat shock N-terminal dom...		Lus10028809 [exp]	6.3	0.8184
AT5G09900		RPN5A, MSA, EMB...	REGULATORY PARTICLE NON-ATPASE...		Lus10006797 [exp]	6.9	0.7996
AT5G59180		NRPB7	DNA-directed RNA polymerase II...		Lus10001559 [exp]	8.8	0.8079

Compare expression of checked genes

Lus10018001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.