Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G48635 157 / 2e-46 PEX3-2, PEX3 PEROXIN 3-2, peroxin 3 (.1.2) AT3G18160 137 / 2e-39 PEX3-1 peroxin 3-1 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041998 [exp] 323 / 5e-111 AT1G48635 436 / 2e-153 PEROXIN 3-2, peroxin 3 (.1.2) Lus10009676 [exp] 222 / 2e-71 AT1G48635 404 / 2e-140 PEROXIN 3-2, peroxin 3 (.1.2) Lus10009038 [exp] 187 / 1e-54 AT1G18070 654 / 0.0 Translation elongation factor EF1A/initiation factor IF2gamma family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G041700 [exp] 160 / 1e-47 AT1G48635 439 / 1e-154 PEROXIN 3-2, peroxin 3 (.1.2) Potri.012G049700 [exp] 159 / 4e-47 AT1G48635 441 / 5e-155 PEROXIN 3-2, peroxin 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04882 [flax] [poplar] Peroxin-3 Peroxin-3
Representative CDS sequence Show only first row Show all	>Lus10018002 pacid=23147973 polypeptide=Lus10018002 locus=Lus10018002.g ID=Lus10018002.BGIv1.0 annot-version=v1.0 ATGTCCGTTTTCGACTTGTGTTATTATTTGCTATCGTTATCTTCTGTGTATCTATTAGAACTACGATCAGCAGGTGAATCATCTGTTCCTTCAGTTGGGG AGGATGCCGATCTCATTGACAGAGATGACCAGCAAAATTTTTTGGCTGCCACGGCTTATCTCCCACATTCTGGCTTGCTTGTGTTGGCAGCTGATATTCA AGCAGCAGTGACAGAAGCATTAAAGGCGAAACAATTGAAAGATTTGCTAGACGCAACTGCAATTCGTGAAACAGTAATGCAGATAACCGATATATTCATA GGCATGGGAAGTCCCGGGAGGTGGGTAGACTACTTGATGCCGGTGGAGACTACGTTACACAAAGAGGCAATGGTTGTTACAAAATTCGATCAGCTCATGC TCGAGACACGAGAAGTTATATTGAGCCCCGAGTTCGGAAGAGTTGTGGAGGTCTCTCTCAAGCAACTGATCGATTCCCTTGTGGAAGACCTGGAAACACA GTCCGGAGAGGGCAGTCTAGCGACAGCTCTGCCTCTGGCGAAACTTTTGCCTCGAGTGGCCCAGGTAGCTTCGTTGATACTCACAGAACCGAGTGAGAAT CGTTACATCCGAATCATCAGAGCATCCTCGGAGGTTGAGCTCTTCTTCACTCTCTTGTACGCGAATGCACCGCCGGAGGAGTCGTAG
AA sequence Show only first row Show all	>Lus10018002 pacid=23147973 polypeptide=Lus10018002 locus=Lus10018002.g ID=Lus10018002.BGIv1.0 annot-version=v1.0 MSVFDLCYYLLSLSSVYLLELRSAGESSVPSVGEDADLIDRDDQQNFLAATAYLPHSGLLVLAADIQAAVTEALKAKQLKDLLDATAIRETVMQITDIFI GMGSPGRWVDYLMPVETTLHKEAMVVTKFDQLMLETREVILSPEFGRVVEVSLKQLIDSLVEDLETQSGEGSLATALPLAKLLPRVAQVASLILTEPSEN RYIRIIRASSEVELFFTLLYANAPPEES

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G48635		PEX3-2, PEX3	PEROXIN 3-2, peroxin 3 (.1.2)		Lus10018002 [exp]	0	1
AT1G03290			unknown protein		Lus10028005 [exp]	1.0	0.9330
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Lus10018445 [exp]	3.7	0.8907
AT1G13580		LOH3, LAG13	LAG One Homologue 3, LAG1 long...		Lus10013494 [exp]	6.6	0.8924
AT3G53500		RSZ32, RS2Z32, ...	arginine/serine-rich zinc knuc...		Lus10025280 [exp]	7.4	0.9027
AT2G32760			unknown protein		Lus10037826 [exp]	10.2	0.8830
AT1G26910		RPL10B	ribosomal protein L10 B, Ribos...		Lus10003055 [exp]	10.7	0.8825
AT3G49200			O-acyltransferase (WSD1-like) ...		Lus10019840 [exp]	12.5	0.8918
AT4G18880	HSF	AT-HSFA4A ,HSF ...	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10029268 [exp]	14.1	0.9120
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	14.1	0.9112
AT4G15563			unknown protein		Lus10012807 [exp]	14.9	0.8909

Compare expression of checked genes

Lus10018002 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.