Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17970 680 / 0 ATTOC64-III translocon at the outer membrane of chloroplasts 64-III (.1) AT5G09420 514 / 4e-177 MTOM64, ATTOC64-V, AtmtOM64 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) AT1G08980 333 / 6e-109 ATTOC64-I, ATAMI1 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) AT1G56440 94 / 3e-20 TPR5 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT2G42810 87 / 1e-17 AtPP5, PP5.2, PP5, PAPP5 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2) AT1G04190 82 / 1e-16 TPR3 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12270 76 / 4e-14 Hop1 Hop1, stress-inducible protein, putative (.1) AT1G62740 75 / 5e-14 Hop2 Hop2, stress-inducible protein, putative (.1) AT4G08320 74 / 1e-13 TPR8 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G12400 72 / 3e-13 Hop3 Hop3, stress-inducible protein, putative (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042001 [exp] 1071 / 0 AT3G17970 714 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009682 [exp] 811 / 0 AT3G17970 700 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10009050 [exp] 795 / 0 AT3G17970 675 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Lus10029941 [exp] 360 / 5e-119 AT1G08980 563 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10004466 [exp] 348 / 2e-114 AT1G08980 549 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Lus10031418 [exp] 92 / 1e-19 AT1G56440 436 / 1e-150 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10018179 [exp] 83 / 1e-16 AT4G08320 389 / 9e-134 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10025656 [exp] 83 / 1e-16 AT4G08320 379 / 9e-130 tetratricopeptide repeat 8, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10004336 [exp] 82 / 4e-16 AT1G62740 873 / 0.0 Hop2, stress-inducible protein, putative (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038600 [exp] 769 / 0 AT3G17970 747 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.012G046900 [exp] 761 / 0 AT3G17970 744 / 0.0 translocon at the outer membrane of chloroplasts 64-III (.1) Potri.001G205300 [exp] 520 / 3e-179 AT5G09420 724 / 0.0 outer membrane 64, ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-V, translocon at the outer membrane of chloroplasts 64-V (.1) Potri.013G024200 [exp] 396 / 2e-133 AT1G08980 519 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.013G024100 [exp] 370 / 3e-123 AT1G08980 518 / 0.0 ARABIDOPSIS THALIANA TRANSLOCON AT THE OUTER MEMBRANE OF CHLOROPLASTS 64-I, AMIDASE-LIKE PROTEIN 1, amidase 1 (.1) Potri.005G014100 [exp] 98 / 2e-21 AT1G56440 476 / 1e-165 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.013G008400 [exp] 95 / 2e-20 AT1G56440 471 / 1e-163 tetratricopeptide repeat 5, Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.008G156500 [exp] 81 / 3e-16 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G082900 [exp] 81 / 3e-16 AT1G04190 540 / 0.0 tetratricopeptide repeat 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G141800 [exp] 79 / 3e-15 AT2G42810 895 / 0.0 Arabidopsis thaliana protein phosphatase 5, protein phosphatase 5.2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01425 [flax] [poplar] Amidase Amidase CL0020 [flax] [poplar] TPR PF00515 [flax] [poplar] TPR_1 Tetratricopeptide repeat
Representative CDS sequence Show only first row Show all	>Lus10018004 pacid=23147994 polypeptide=Lus10018004 locus=Lus10018004.g ID=Lus10018004.BGIv1.0 annot-version=v1.0 ATGGTGTCCTCTCCATCTGTACCTACCAATCTATGGGTGCTCCTCGGGCTGAGCCTCGCCGGGATCTTCCTACTCACCAGAAGGTTGAAGAAAGCTGTGC GGGAAGACTTCGGCGCCTTTGTCCAGAAACTTCAACTCCTCCCCCCACCTCAGCCAGCTCCGCCTAAAGCTCAACATCCACTCACCGGTCTCACCTTCGC CGTCTCAGACGTATTTGACATTGAAGGATTTGTGACTGGTTGTGGGCATCCTGATTGGGCAAGTACACATGGTTCAGCTACTCGGACGGCTGCTGTGGTT TCTAATCTTGTTCAAGGGGGTGCTACTTGTGTAGGCAAAACCGTGGTGGATGAACTGGCTTATAGTATCAGTGGAGAAAATAAGCATTATGGTACACCTA CGAATCCTGCAGCTCCTACTCGTGTCCCTGGTGGATCTTGTAGCGGATCAGCTGTTGCTGTAGCTGCTAAGTTTGTTGGTTTTGCATTGGGCGTTGATGC GGTTGGTGGTGTACGAGTACCTGCTGCGTTTTGTGGGGTCATAGGATACCGTCCATCATATGGAGCTCTTTCCAACATGGGAATGTTAACTGTTTCTCCA AGTTTAGATACGGTTGGATTGTTTGCCAATGATCCAGACATTCTGCGGCGTGTTGGTAACGTGCTCCTGCGACTTCCATTTGGATTTCAACGTAAACCCC GACAAATTATAATAGCTGATGACACTTTTGAACGATTCAAGATCCCTTTCGATAGGCTTGCTCAGGCATTGATCAAATCCACCGAGAAGCTCTTTGGAAG ACAAGTGTTGAAGCATGAAATTCTGGAGGATTTTCTATGTTCTAATGTTCCAAGCTTGAAAAAGATCCACAGAAAGAACGCCAATGGTGAAGTCAAAGTC AAAACTTCATCACTGCAAGTGCTAGCAAATATCATGCAGGCTCTTCATAGATTTGAGTTCAATGATATTCACGAGGAGTGGTTGAAATCGGAAAAACCTG TCCTCGATCCTGTTATCTCTGTACAATTGAATGATGCAGCTGAGATTTCAGATACAGAGATTGAAACATACAGATCTGTTAGAAATGAAATGCGTGCAGC TATGAACTCTCTGCTGAAGGACGATGGAATTCTTGTTATTCCTACAACAGCTTATCTTCCTCCTAAACTCAATTCAAAAGAGATGCTCTTAGAGGACTAC AAGACTCGTTCTTTTAGCCTCCTGAGTATTGCTAGTCTCTCAGGATGTTGTCAGGTCACAATTCCAATGGGGAAGCATGACAATTGTCCTGCTTCAGTTT CTTTCATAGCCCGGCAAGGGGGTGATCGCTTACTACTAGACACGTTGCAGACCATGTTTACATCTCTACAAGAGCAGGCCGATATTCTTTCTACATCCAA TAGATCTAGCCACGCCAAAAACCCTGAAATATCTGCAGATGAAGCTAAGGAGAAGGGTAACCAAGCATTCAAAGAGAAGCAATGGCAAAAGGCTATTGGG TTTTACACAGAAGCAATTAAACTTAATGACAGTAGCGCAACTTATTACAGCAACAGAGCTGCAGCTTATCTTGAAATGGCAAGCTTTCATAAAGCCGAAG CTGATTGTTCGAAAGCTATTGACCTGGATAAAAAGAATGTGAAGGCCTATTTGAGAAGAGGCACGGCGAGGGAGATGCTTGGTTATTATAAGGAGGCCAT TGGAGATTTCCAATACGCCTTGGTGCTCGAACCAACGAATAAGCGAGCGGCAGCTTCTGCAGAAAGGCTGAGAAAGGTGTTCCCATAA
AA sequence Show only first row Show all	>Lus10018004 pacid=23147994 polypeptide=Lus10018004 locus=Lus10018004.g ID=Lus10018004.BGIv1.0 annot-version=v1.0 MVSSPSVPTNLWVLLGLSLAGIFLLTRRLKKAVREDFGAFVQKLQLLPPPQPAPPKAQHPLTGLTFAVSDVFDIEGFVTGCGHPDWASTHGSATRTAAVV SNLVQGGATCVGKTVVDELAYSISGENKHYGTPTNPAAPTRVPGGSCSGSAVAVAAKFVGFALGVDAVGGVRVPAAFCGVIGYRPSYGALSNMGMLTVSP SLDTVGLFANDPDILRRVGNVLLRLPFGFQRKPRQIIIADDTFERFKIPFDRLAQALIKSTEKLFGRQVLKHEILEDFLCSNVPSLKKIHRKNANGEVKV KTSSLQVLANIMQALHRFEFNDIHEEWLKSEKPVLDPVISVQLNDAAEISDTEIETYRSVRNEMRAAMNSLLKDDGILVIPTTAYLPPKLNSKEMLLEDY KTRSFSLLSIASLSGCCQVTIPMGKHDNCPASVSFIARQGGDRLLLDTLQTMFTSLQEQADILSTSNRSSHAKNPEISADEAKEKGNQAFKEKQWQKAIG FYTEAIKLNDSSATYYSNRAAAYLEMASFHKAEADCSKAIDLDKKNVKAYLRRGTAREMLGYYKEAIGDFQYALVLEPTNKRAAASAERLRKVFP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17970		ATTOC64-III	translocon at the outer membra...		Lus10018004 [exp]	0	1
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10007007 [exp]	4.5	0.9491
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Lus10002841 [exp]	7.0	0.9310
AT2G45430	AT-hook	AHL22	AT-hook motif nuclear-localize...		Lus10006664 [exp]	10.0	0.9385
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10039806 [exp]	11.0	0.9400
AT4G25320	AT-hook		AT hook motif DNA-binding fami...		Lus10031118 [exp]	13.4	0.9395
AT3G12070		AtRGTB2	RAB geranylgeranyl transferase...		Lus10039714 [exp]	13.8	0.8943
AT2G18410			unknown protein		Lus10028481 [exp]	16.2	0.9117
AT3G15850		JB67, FADB, ADS...	FATTY ACID DESATURASE B, fatty...		Lus10041042 [exp]	17.3	0.9341
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Lus10018575 [exp]	21.6	0.9276
AT1G23170			Protein of unknown function DU...		Lus10021774 [exp]	21.9	0.9206

Compare expression of checked genes

Lus10018004 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.