Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17980 218 / 4e-73 AtC2 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G48590 214 / 2e-71 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) AT5G37740 207 / 5e-69 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G66360 194 / 1e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G73580 193 / 2e-63 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70810 185 / 3e-60 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT2G01540 179 / 1e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G70790 177 / 4e-57 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) AT1G70800 175 / 3e-56 EHB1 ENHANCED BENDING 1, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT1G23140 168 / 1e-53 Calcium-dependent lipid-binding (CaLB domain) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042002 [exp] 325 / 2e-115 AT1G48590 240 / 6e-82 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3) Lus10009684 [exp] 242 / 1e-81 AT3G17980 254 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10009053 [exp] 241 / 4e-81 AT3G17980 255 / 1e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10033585 [exp] 196 / 1e-64 AT3G17980 244 / 1e-83 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10017629 [exp] 192 / 5e-63 AT3G17980 241 / 2e-82 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10021775 [exp] 166 / 1e-52 AT1G70810 209 / 6e-70 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10001594 [exp] 151 / 2e-46 AT3G17980 187 / 7e-61 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Lus10034591 [exp] 143 / 8e-44 AT1G70790 181 / 3e-59 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Lus10003710 [exp] 125 / 6e-37 AT1G48590 158 / 2e-50 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2), Calcium-dependent lipid-binding (CaLB domain) family protein (.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047100 [exp] 223 / 4e-75 AT3G17980 251 / 2e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.017G125500 [exp] 219 / 1e-73 AT3G17980 249 / 6e-86 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.004G089500 [exp] 208 / 2e-69 AT3G17980 245 / 4e-84 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.010G110900 [exp] 191 / 1e-62 AT1G70790 233 / 3e-79 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.008G131500 [exp] 189 / 5e-62 AT3G17980 202 / 5e-67 Arabidopsis thaliana C2 domain, Calcium-dependent lipid-binding (CaLB domain) family protein (.1) Potri.011G098500 [exp] 129 / 3e-36 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.016G005300 [exp] 117 / 1e-33 AT5G47710 264 / 1e-91 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.001G372000 [exp] 120 / 3e-33 AT4G21160 506 / 0.0 ARF-GAP domain 12, Calcium-dependent ARF-type GTPase activating protein family (.1.2.3.4) Potri.006G004600 [exp] 116 / 3e-33 AT5G47710 270 / 3e-94 Calcium-dependent lipid-binding (CaLB domain) family protein (.1), Calcium-dependent lipid-binding (CaLB domain) family protein (.2) Potri.003G198301 [exp] 112 / 3e-29 AT3G07940 503 / 7e-178 Calcium-dependent ARF-type GTPase activating protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [flax] [poplar] C2 PF00168 [flax] [poplar] C2 C2 domain
Representative CDS sequence Show only first row Show all	>Lus10018005 pacid=23147857 polypeptide=Lus10018005 locus=Lus10018005.g ID=Lus10018005.BGIv1.0 annot-version=v1.0 ATGGCAGACACACAGTCACCGGCGGCGGTGTCGCCGGGGCCTATGGAAGCAAGCCAATCTCCGATGGCGGGGCTGTTAGGGTTGCTGAAGATCCACATCA AACGCGGGGTCAACCTCGCTGTCCGCGACGTTCGCAGCAGCGACCCTTACTGCGTCGTCAAGATGGGCACCCAGGATGTGAATCCAGAGTGGAATGAAGA CTTAACTCTATCTGTCACTGATGCTGATCTTCCTGTCAAGTTGACTGTTTATGACTACGACACATTTTCCTTAGACGACAAGATGGGGGACGCGGAGTTC GACATCAAACCGTTCATGGAAGCTTTGAAGATGGACGTGGTAGGCCTCCCGGACGGGACCATACTTAACAAGATACAACCGAGCAGGGCCAACTGCCTGG CTGAGGAGACCTGCATTGTGTGCGAGGAAGGCAAGGTTATTCAAGACATGATCCTCAGATTGAGGAACGTCGAATGCGGTGAGGTTGAGCTCCAGTTGCG GTGGATCGATCTCCACGGTCTCGGTCACGGTCACGATCACAGTAGCAACAGCATTTAA
AA sequence Show only first row Show all	>Lus10018005 pacid=23147857 polypeptide=Lus10018005 locus=Lus10018005.g ID=Lus10018005.BGIv1.0 annot-version=v1.0 MADTQSPAAVSPGPMEASQSPMAGLLGLLKIHIKRGVNLAVRDVRSSDPYCVVKMGTQDVNPEWNEDLTLSVTDADLPVKLTVYDYDTFSLDDKMGDAEF DIKPFMEALKMDVVGLPDGTILNKIQPSRANCLAEETCIVCEEGKVIQDMILRLRNVECGEVELQLRWIDLHGLGHGHDHSSNSI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G17980		AtC2	Arabidopsis thaliana C2 domain...		Lus10018005 [exp]	0	1
AT5G07220		ATBAG3	BCL-2-associated athanogene 3 ...		Lus10023279 [exp]	3.2	0.9813
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10027782 [exp]	3.3	0.9831
AT2G17940			Plant protein of unknown funct...		Lus10028461 [exp]	4.5	0.9811
AT2G47010			unknown protein		Lus10007453 [exp]	4.9	0.9755
AT3G18660		PGSIP1, GUX1	glucuronic acid substitution o...		Lus10033485 [exp]	6.5	0.9812
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Lus10009254 [exp]	7.1	0.9807
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Lus10016872 [exp]	7.5	0.9714
AT1G19300		ATGATL1, GATL1,...	PARVUS, GAOLAOZHUANGREN 1, GAL...		Lus10018801 [exp]	7.7	0.9653
AT2G28110		IRX7, FRA8	IRREGULAR XYLEM 7, FRAGILE FIB...		Lus10037376 [exp]	10.0	0.9699
AT4G28380			Leucine-rich repeat (LRR) fami...		Lus10033672 [exp]	10.4	0.9719

Compare expression of checked genes

Lus10018005 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.