Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73590 352 / 2e-119 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT5G57090 327 / 1e-109 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT1G23080 304 / 4e-102 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT2G01420 306 / 1e-101 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G70940 303 / 1e-100 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G77110 269 / 8e-88 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G16530 179 / 2e-55 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1) AT5G15100 166 / 2e-50 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009685 [exp] 379 / 3e-133 AT1G73590 568 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009054 [exp] 379 / 4e-130 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 312 / 1e-103 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 311 / 2e-103 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10020829 [exp] 259 / 4e-86 AT2G01420 506 / 7e-177 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10012680 [exp] 207 / 6e-68 AT2G01420 245 / 8e-78 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10042003 [exp] 190 / 6e-62 AT1G73590 165 / 4e-72 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10020193 [exp] 188 / 1e-58 AT5G16530 548 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1) Lus10026994 [exp] 187 / 2e-58 AT5G16530 532 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G038700 [exp] 361 / 4e-123 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.012G047200 [exp] 360 / 4e-123 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 337 / 2e-114 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 335 / 3e-113 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 321 / 3e-107 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 310 / 5e-103 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 308 / 3e-102 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.001G205200 [exp] 273 / 9e-90 AT5G57090 523 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 267 / 2e-87 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 257 / 2e-83 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10018006 pacid=23147970 polypeptide=Lus10018006 locus=Lus10018006.g ID=Lus10018006.BGIv1.0 annot-version=v1.0 ATGATCACCGGCATAGACTTCTACCACGTAATGACGGCGATGGTCCCACTCTACGTCGCCATGTTCCTCGCCTACGGCTCCGTCAAGTGGTGGAAGATCT TCACCCCCGACCAATGCTCTGGAATCAACCGATTCGTCGCTCTTTTTGGCGTCCCTCTCCTTTCCTTCCACTTCATCTCCTCCAACACCCCTTACGAAAT GAACTTCCACTTCATCGCCGCCGACTCTCTCCAAAAACTCATCATCCTAGTCGCTTTAGCCTTCTGGTCAAATCTCACCCGACGTGGCTCACTAGACTGG ACGATCACTCTCTTCTCCCTCTCTACCCTCCCTAATACTTTGGTGATGGGGATTCCTCTCCTGAAAGGAATGTACGGCGACGAATCGGGAACCCTAATGG TCCAGATCGTCGTGTTACAGTGTATCATCTGGTACACTCTGATGCTGTTCATGTTCGAGTTCCGTGGAGCTAGGGTTTTGATCTCCGAGCAGTTCCCTGA CACTGCTGGATCTATCGTATCGATTCATGTCGATTCTGATGTGATGTCGCTCGACGGACGGCAGCCGCTGGAAACGGCGGCGGGGGGTAAACAGGACGGG AAGCTGTAA
AA sequence Show only first row Show all	>Lus10018006 pacid=23147970 polypeptide=Lus10018006 locus=Lus10018006.g ID=Lus10018006.BGIv1.0 annot-version=v1.0 MITGIDFYHVMTAMVPLYVAMFLAYGSVKWWKIFTPDQCSGINRFVALFGVPLLSFHFISSNTPYEMNFHFIAADSLQKLIILVALAFWSNLTRRGSLDW TITLFSLSTLPNTLVMGIPLLKGMYGDESGTLMVQIVVLQCIIWYTLMLFMFEFRGARVLISEQFPDTAGSIVSIHVDSDVMSLDGRQPLETAAGGKQDG KL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	0	1
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	1.0	0.9324
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	1.4	0.8663
AT3G19895			RING/U-box superfamily protein...		Lus10029068 [exp]	2.4	0.8563
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025142 [exp]	3.2	0.8423
AT4G18570			Tetratricopeptide repeat (TPR)...		Lus10025419 [exp]	4.2	0.7950
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042003 [exp]	4.5	0.8443
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	6.9	0.8199
AT4G12610		RAP74, ATRAP74	transcription activators;DNA b...		Lus10017289 [exp]	7.6	0.7559
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	7.7	0.8381
AT1G10750			Protein of Unknown Function (D...		Lus10013046 [exp]	9.9	0.7849

Compare expression of checked genes

Lus10018006 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.