Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G57090 252 / 2e-81 MM31, ATPIN2, AGR1, AGR, WAV6, EIR1 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) AT2G01420 249 / 3e-80 PIN4, ATPIN4 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) AT1G70940 241 / 6e-77 PIN3, ATPIN3 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) AT1G23080 239 / 1e-76 PIN7, ATPIN7 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3) AT1G73590 231 / 2e-73 ATPIN1, PIN1 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) AT1G77110 221 / 3e-70 PIN6 PIN-FORMED 6, Auxin efflux carrier family protein (.1) AT5G15100 185 / 4e-58 ATPIN8, PIN8 PIN-FORMED 8, Auxin efflux carrier family protein (.1) AT5G16530 169 / 5e-52 PIN5 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042004 [exp] 286 / 7e-97 AT1G73590 539 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10009686 [exp] 275 / 4e-96 AT2G01420 288 / 1e-95 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10020830 [exp] 263 / 3e-91 AT2G01420 308 / 4e-103 ARABIDOPSIS PIN-FORMED 4, Auxin efflux carrier family protein (.1.2) Lus10009054 [exp] 276 / 9e-91 AT1G73590 856 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Lus10001429 [exp] 246 / 7e-79 AT5G57090 837 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10001637 [exp] 246 / 9e-79 AT5G57090 838 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Lus10010303 [exp] 193 / 2e-61 AT5G15100 399 / 1e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10013422 [exp] 190 / 6e-60 AT5G15100 397 / 4e-138 PIN-FORMED 8, Auxin efflux carrier family protein (.1) Lus10020193 [exp] 172 / 4e-53 AT5G16530 548 / 0.0 PIN-FORMED 5, Auxin efflux carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G047200 [exp] 268 / 1e-87 AT1G73590 870 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.010G112800 [exp] 264 / 8e-86 AT1G70940 952 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.008G129400 [exp] 263 / 1e-85 AT1G70940 961 / 0.0 ARABIDOPSIS PIN-FORMED 3, Auxin efflux carrier family protein (.1) Potri.015G038700 [exp] 261 / 5e-85 AT1G73590 858 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.006G037000 [exp] 255 / 4e-83 AT1G73590 756 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.016G035300 [exp] 250 / 3e-81 AT1G73590 743 / 0.0 ARABIDOPSIS THALIANA PIN-FORMED 1, Auxin efflux carrier family protein (.1) Potri.018G139400 [exp] 251 / 5e-81 AT5G57090 950 / 0.0 WAVY ROOTS 6, ETHYLENE INSENSITIVE ROOT 1, ARABIDOPSIS THALIANA PIN-FORMED 2, AGRAVITROPIC ROOT 1, AGRAVITROPIC ROOT, Auxin efflux carrier family protein (.1) Potri.002G072200 [exp] 214 / 2e-67 AT1G77110 716 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.005G187500 [exp] 213 / 4e-67 AT1G77110 707 / 0.0 PIN-FORMED 6, Auxin efflux carrier family protein (.1) Potri.014G146800 [exp] 206 / 2e-65 AT1G23080 239 / 4e-73 ARABIDOPSIS PIN-FORMED 7, Auxin efflux carrier family protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0064 [flax] [poplar] CPA_AT PF03547 [flax] [poplar] Mem_trans Membrane transport protein
Representative CDS sequence Show only first row Show all	>Lus10018007 pacid=23147986 polypeptide=Lus10018007 locus=Lus10018007.g ID=Lus10018007.BGIv1.0 annot-version=v1.0 ATGACGAGACTGATTCTCATTATGGTGTGGAGGAAGCTGATTAGGAACCCCAATACGTATTCCAGCTTGATTGGTCTGGTTTGGTCACTGGTCTCCTTCA GGTGGCATGTTGAAATGCCGGCTATCGTAGCAAAGTCTATCTCCATTCTCTCCGATGCAGGGCTTGGCATGGCCATGTTCAGTCTTGGGTTGTTCATGGC ATTGCAGCCGAAGATCATAGCTTGTGGGAAGTCCACAGCAGCATTTGCAGCTGGAGTTCGGTTCTTCGTCGGTCCAGCTGTCATGGCTGCTGCTTCGATT GTCGTCGGTCTCAAAGGCACCCTCCTCCACATCGCCATTGTCCAGGCAGCGCTGCCACAGGGTATTGTTCCCTTTGTCTTTGCAAAGGAGTACAACCTGC ATCCTGATATTCTCAGCACAGCGGTGATATTTGGGATGCTTATTGCTTTGCCCTTTACCCTAGTGTACTACATTCTGCTAGGACTATGA
AA sequence Show only first row Show all	>Lus10018007 pacid=23147986 polypeptide=Lus10018007 locus=Lus10018007.g ID=Lus10018007.BGIv1.0 annot-version=v1.0 MTRLILIMVWRKLIRNPNTYSSLIGLVWSLVSFRWHVEMPAIVAKSISILSDAGLGMAMFSLGLFMALQPKIIACGKSTAAFAAGVRFFVGPAVMAAASI VVGLKGTLLHIAIVQAALPQGIVPFVFAKEYNLHPDILSTAVIFGMLIALPFTLVYYILLGL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G57090		MM31, ATPIN2, A...	WAVY ROOTS 6, ETHYLENE INSENSI...		Lus10018007 [exp]	0	1
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	1.0	0.9324
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10042004 [exp]	3.5	0.8429
AT4G23500			Pectin lyase-like superfamily ...		Lus10017517 [exp]	5.0	0.8434
AT1G51680		AT4CL1, 4CL.1, ...	ARABIDOPSIS THALIANA 4-COUMARA...		Lus10005390 [exp]	7.6	0.8615
AT3G19895			RING/U-box superfamily protein...		Lus10029068 [exp]	8.5	0.8322
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10009930 [exp]	9.2	0.8476
AT1G08620		PKDM7D	Transcription factor jumonji (...		Lus10003548 [exp]	10.8	0.7220
AT3G29200		ATCM1, CM1	ARABIDOPSIS THALIANA CHORISMAT...		Lus10032998 [exp]	11.9	0.8583
AT2G30340	AS2	LBD13	LOB domain-containing protein ...		Lus10024183 [exp]	12.4	0.8335
AT3G12150			unknown protein		Lus10027799 [exp]	12.6	0.7760

Compare expression of checked genes

Lus10018007 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.