Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G12560 82 / 5e-17 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G16740 77 / 2e-15 F-box and associated interaction domains-containing protein (.1) AT3G17620 76 / 5e-15 F-box and associated interaction domains-containing protein (.1) AT3G16210 75 / 1e-14 F-box family protein (.1) AT3G21120 74 / 3e-14 F-box and associated interaction domains-containing protein (.1) AT3G17480 74 / 3e-14 F-box and associated interaction domains-containing protein (.1) AT3G06240 73 / 1e-13 F-box family protein (.1) AT3G20690 71 / 2e-13 F-box and associated interaction domains-containing protein (.1) AT3G49980 71 / 3e-13 F-box and associated interaction domains-containing protein (.1) AT3G23880 71 / 3e-13 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014935 [exp] 294 / 5e-96 AT3G06240 84 / 2e-17 F-box family protein (.1) Lus10014937 [exp] 172 / 4e-50 AT3G06240 79 / 4e-16 F-box family protein (.1) Lus10009424 [exp] 156 / 5e-43 AT3G06240 73 / 9e-14 F-box family protein (.1) Lus10029725 [exp] 112 / 5e-27 AT3G06240 74 / 3e-14 F-box family protein (.1) Lus10001105 [exp] 112 / 5e-27 AT3G06240 109 / 3e-26 F-box family protein (.1) Lus10028961 [exp] 111 / 1e-26 AT4G12560 81 / 2e-16 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10018095 [exp] 108 / 1e-25 ND 49 / 4e-06 Lus10023372 [exp] 107 / 2e-25 AT3G16210 67 / 5e-12 F-box family protein (.1) Lus10037892 [exp] 104 / 2e-24 AT3G06240 107 / 7e-26 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121200 [exp] 100 / 6e-23 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058000 [exp] 92 / 2e-20 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.008G199800 [exp] 92 / 4e-20 AT3G23880 182 / 3e-53 F-box and associated interaction domains-containing protein (.1) Potri.001G318300 [exp] 91 / 7e-20 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.001G318400 [exp] 89 / 2e-19 AT3G06240 142 / 3e-38 F-box family protein (.1) Potri.010G207500 [exp] 87 / 1e-18 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 87 / 2e-18 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.001G129400 [exp] 83 / 2e-17 AT4G12560 100 / 3e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 83 / 3e-17 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G262900 [exp] 82 / 3e-17 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10018008 pacid=23148016 polypeptide=Lus10018008 locus=Lus10018008.g ID=Lus10018008.BGIv1.0 annot-version=v1.0 ATGGACCGACGTGATTACTTCCTCCCGCAAGACCTCGTCGCCGACATCTTGTCACGGCTCCCCACGACCGACGCCGCCGTCCGGTTCCGCTGCGTTTGCA AATCCTGGCACCGACTCCTTTCGGACCCTAACTTCATCCACCGCCACCTGTTGTCTGAACTTCATGGTGGAGACAACGACGAAGCCCCAGTAATTATGAT CACTCGACTCAGTTTGGAGGAGACTACTCGTTTACGTTACTGTTGGCTCTCTTACGACACACTCCTCCCCAAAACGGCACCTTACAACGACCACGAGGGT TTGCATTACCTAGATGTACCCGTCGCGGAAATTTACAGCACCGGACAGCCGTTGCTGTATATCCGCCAGATTATCGTTGGCTGGTGCCATGGCTTGTTCT GCATTACTTATATGTCCTGGTGGGAATCAACAACTGCTTACCTTATTCTTTGGAACCCCTCAACTTCAGAGGCTAAGGTCTTGCCGAATTCTCACTATAA CTATGACACTAAGTTCACAACCGCAGACTATATAGGTTTCGGGTTTGATTCGAGGACTGGAGACTATAAAGTGGTGAGGGCTTTTCAAGATGTCACGAAT AATAACTTGTCTACTGTCAAGGTTTATAGCTTGAGGAGGGGTTCGTGGAGAGAAGTCAACGCCTCCTCCAAAGAAGACCTTGAGAAATTTCTCTTGGCCA CGGAGGACGCTTGGATGCATACATCCAGCGGTGGAAAAATCTATTGGTATTGTATTTGCTGTAACTTCATTGTTTGCTTTGACTTTAGGGAGGAAAGATT TAGCCTTCAACTTTTACCGACCAGCTGCTTTACGGAGTGCCGTGAATTTCATCTGACAACCACGCCCAAGGAAGATTCTTTAGTGGCTGTATTTCTAGAC AGTAAGGATAACGTTGAGATTTGGGGGCTGTTAAGGTACCAGAGTGTAGAATCGTGGACTAAGTTGTTTCGTTGCGACGCAAGTCGAATATTGGATTCGA TTGGCAAAGATCATTGCATGATGAGTTTTTTGGGAAATTGCCAACACATTTTCCTCAAGGCTAACGGTGAATTGTTGAAGGTCGACTTCAAGAAAGAAAA AGTTAGTGACAATGGAATTCGAATTCTGAATATGAGTCGGGACAATATAGACCATAATGTACTTGAGGCGTGTAGTTATGTCCCTTCTCGAGTATCTATT GTTAGATTGTTGAGGAGGAATCAAGATTGTTCACAATAA
AA sequence Show only first row Show all	>Lus10018008 pacid=23148016 polypeptide=Lus10018008 locus=Lus10018008.g ID=Lus10018008.BGIv1.0 annot-version=v1.0 MDRRDYFLPQDLVADILSRLPTTDAAVRFRCVCKSWHRLLSDPNFIHRHLLSELHGGDNDEAPVIMITRLSLEETTRLRYCWLSYDTLLPKTAPYNDHEG LHYLDVPVAEIYSTGQPLLYIRQIIVGWCHGLFCITYMSWWESTTAYLILWNPSTSEAKVLPNSHYNYDTKFTTADYIGFGFDSRTGDYKVVRAFQDVTN NNLSTVKVYSLRRGSWREVNASSKEDLEKFLLATEDAWMHTSSGGKIYWYCICCNFIVCFDFREERFSLQLLPTSCFTECREFHLTTTPKEDSLVAVFLD SKDNVEIWGLLRYQSVESWTKLFRCDASRILDSIGKDHCMMSFLGNCQHIFLKANGELLKVDFKKEKVSDNGIRILNMSRDNIDHNVLEACSYVPSRVSI VRLLRRNQDCSQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G16210			F-box family protein (.1)		Lus10018008 [exp]	0	1
					Lus10006101 [exp]	23.0	0.6719
AT2G30270			Protein of unknown function (D...		Lus10026421 [exp]	32.9	0.7166
AT4G14410	bHLH	bHLH104	basic Helix-Loop-Helix 104, ba...		Lus10021199 [exp]	42.3	0.6953
AT1G78160		APUM7	pumilio 7 (.1)		Lus10036469 [exp]	46.5	0.6357
AT4G12520			Bifunctional inhibitor/lipid-t...		Lus10032259 [exp]	86.4	0.5914

Compare expression of checked genes

Lus10018008 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.