Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18210 195 / 2e-64 Calcium-binding EF-hand family protein (.1.2) AT1G73630 194 / 4e-64 EF hand calcium-binding protein family (.1) AT1G24620 137 / 3e-41 EF hand calcium-binding protein family (.1) AT5G37770 133 / 6e-40 CML24, TCH2 TOUCH 2, CALMODULIN-LIKE 24, EF hand calcium-binding protein family (.1) AT1G66400 132 / 1e-39 CML23 calmodulin like 23 (.1) AT2G15680 127 / 1e-37 AtCML30 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) AT1G05990 123 / 4e-36 RHS1 ,RHS2 ROOT HAIR SPECIFIC 1, EF hand calcium-binding protein family (.1) AT3G07490 115 / 3e-33 AtCML3, AGD11 calmodulin-like 3, ARF-GAP domain 11 (.1) AT4G14640 111 / 2e-31 CAM8, AtCML8 calmodulin-like 8, calmodulin 8 (.1) AT4G03290 108 / 3e-30 EF hand calcium-binding protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042008 [exp] 239 / 6e-82 AT1G18210 138 / 1e-42 Calcium-binding EF-hand family protein (.1.2) Lus10031345 [exp] 210 / 5e-70 AT1G18210 196 / 1e-64 Calcium-binding EF-hand family protein (.1.2) Lus10009059 [exp] 209 / 7e-70 AT1G18210 197 / 3e-65 Calcium-binding EF-hand family protein (.1.2) Lus10027081 [exp] 145 / 2e-44 AT1G18210 131 / 2e-39 Calcium-binding EF-hand family protein (.1.2) Lus10009127 [exp] 146 / 8e-44 AT1G66400 147 / 2e-44 calmodulin like 23 (.1) Lus10014050 [exp] 128 / 1e-37 AT2G15680 239 / 4e-81 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10004330 [exp] 124 / 9e-37 AT1G24620 207 / 2e-69 EF hand calcium-binding protein family (.1) Lus10019863 [exp] 125 / 1e-36 AT2G15680 233 / 9e-79 calmodulin-like 30, Calcium-binding EF-hand family protein (.1) Lus10028913 [exp] 124 / 1e-36 AT1G24620 204 / 5e-68 EF hand calcium-binding protein family (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G039500 [exp] 208 / 2e-69 AT1G18210 189 / 6e-62 Calcium-binding EF-hand family protein (.1.2) Potri.012G048200 [exp] 200 / 2e-66 AT1G18210 188 / 8e-62 Calcium-binding EF-hand family protein (.1.2) Potri.004G089400 [exp] 153 / 6e-48 AT1G66400 157 / 7e-50 calmodulin like 23 (.1) Potri.017G126200 [exp] 152 / 9e-48 AT1G66400 155 / 5e-49 calmodulin like 23 (.1) Potri.010G107100 [exp] 132 / 4e-39 AT1G24620 220 / 2e-73 EF hand calcium-binding protein family (.1) Potri.008G134300 [exp] 130 / 1e-38 AT1G24620 219 / 2e-73 EF hand calcium-binding protein family (.1) Potri.002G239100 [exp] 121 / 2e-35 AT3G07490 248 / 8e-86 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.017G029700 [exp] 121 / 1e-34 AT3G07490 192 / 1e-62 calmodulin-like 3, ARF-GAP domain 11 (.1) Potri.014G070700 [exp] 116 / 7e-33 AT1G18210 94 / 2e-24 Calcium-binding EF-hand family protein (.1.2) Potri.009G102500 [exp] 115 / 1e-32 AT2G15680 246 / 3e-84 calmodulin-like 30, Calcium-binding EF-hand family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10018012 pacid=23147896 polypeptide=Lus10018012 locus=Lus10018012.g ID=Lus10018012.BGIv1.0 annot-version=v1.0 ATGGCGGAAGCAATCTCAGCCGAAGCATCACCGAAACCCACCCCGACGATCACCTCACCGGCCGCCGGCACCTACAGCACGGACGAGCTCCGAAAAGTGT TCGAGAAGTTCGACACCAACGGCGACGGCAAGATCTCTGCCTCGGAGCTGGCCGGAGTGCTCAGATCCATGGGAACCGAGTACTCCCCACCGGATCTCCA TCGCGCGATGGAGGAGATCGACTCCGACAAGGACGGTTTCATCAACCTGGAGGAGTTCGCGCAGCTCTGCCGTACGTCGTCGTCGGCTGGAGGAGCCGCG GAGGAGCTCCGGGAGGCGTTCGATCTGTACGACGAGAACAAGGACGGGCTCATCTCGGAGGCAGAGCTCCACCAGGTGCTTAACCGCATCGGGATGAGGT GCTCGGTGGATGAGTGCGCAAGGATGATCAAGGGCGTGGATTCCGACGGGGATGGGCGTGTTAATTACAAGGAGTTCGAGAAGATGATGGCATCATCTAA CGGCGGAGGAGGTCCCGCGAAGAACTAG
AA sequence Show only first row Show all	>Lus10018012 pacid=23147896 polypeptide=Lus10018012 locus=Lus10018012.g ID=Lus10018012.BGIv1.0 annot-version=v1.0 MAEAISAEASPKPTPTITSPAAGTYSTDELRKVFEKFDTNGDGKISASELAGVLRSMGTEYSPPDLHRAMEEIDSDKDGFINLEEFAQLCRTSSSAGGAA EELREAFDLYDENKDGLISEAELHQVLNRIGMRCSVDECARMIKGVDSDGDGRVNYKEFEKMMASSNGGGGPAKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18210			Calcium-binding EF-hand family...		Lus10018012 [exp]	0	1
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10024074 [exp]	2.2	0.9459
AT1G75860			unknown protein		Lus10033130 [exp]	2.4	0.9309
AT2G23810		TET8	tetraspanin8 (.1)		Lus10019965 [exp]	4.0	0.9415
AT5G54165			unknown protein		Lus10023231 [exp]	4.0	0.9240
AT1G45063			copper ion binding;electron ca...		Lus10019405 [exp]	5.1	0.8540
AT1G19210	AP2_ERF		Integrase-type DNA-binding sup...		Lus10009798 [exp]	6.0	0.9131
AT4G32020			unknown protein		Lus10001936 [exp]	6.3	0.9046
AT2G18170		ATMPK7	MAP kinase 7 (.1)		Lus10014283 [exp]	6.6	0.9042
AT5G48150	GRAS	PAT1	phytochrome a signal transduct...		Lus10036623 [exp]	7.0	0.9118
AT5G41590			Protein of unknown function (D...		Lus10017526 [exp]	7.1	0.8544

Compare expression of checked genes

Lus10018012 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.