Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18200 268 / 7e-91 AtRABA6b RAB GTPase homolog A6B (.1) AT1G73640 265 / 1e-89 AtRABA6a RAB GTPase homolog A6A (.1) AT5G59150 226 / 1e-74 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT5G45750 224 / 4e-74 AtRABA1c RAB GTPase homolog A1C (.1) AT3G46830 224 / 5e-74 ATRAB-A2C, AtRab11A, AtRABA2c ARABIDOPSIS RAB GTPASE HOMOLOG A2C, RAB GTPase homolog A2C (.1) AT1G07410 223 / 1e-73 ATRAB-A2B, AtRABA2b ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) AT1G16920 223 / 1e-73 ATRABA4B, RAB11, ATRABA1B RAB GTPase homolog A1B (.1) AT5G60860 221 / 6e-73 AtRABA1f RAB GTPase homolog A1F (.1) AT4G18800 220 / 2e-72 AthSGBP, AtRab11B, AtRABA1d RAB GTPase homolog A1D (.1) AT1G09630 219 / 5e-72 ATRAB-A2A, ATRAB11C, ATRABA2A ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042009 [exp] 381 / 1e-135 AT1G18200 276 / 1e-94 RAB GTPase homolog A6B (.1) Lus10029253 [exp] 228 / 3e-75 AT5G45750 393 / 4e-141 RAB GTPase homolog A1C (.1) Lus10007306 [exp] 227 / 6e-75 AT5G45750 387 / 5e-139 RAB GTPase homolog A1C (.1) Lus10025432 [exp] 222 / 5e-73 AT5G60860 422 / 1e-152 RAB GTPase homolog A1F (.1) Lus10013961 [exp] 222 / 5e-73 AT5G60860 412 / 7e-149 RAB GTPase homolog A1F (.1) Lus10040745 [exp] 221 / 9e-73 AT1G07410 394 / 7e-142 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10016486 [exp] 221 / 9e-73 AT1G07410 396 / 1e-142 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10015297 [exp] 221 / 2e-72 AT5G60860 428 / 6e-155 RAB GTPase homolog A1F (.1) Lus10002178 [exp] 220 / 3e-72 AT5G60860 423 / 4e-153 RAB GTPase homolog A1F (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G039700 [exp] 278 / 6e-95 AT1G73640 331 / 2e-116 RAB GTPase homolog A6A (.1) Potri.011G070300 [exp] 226 / 7e-75 AT5G45750 392 / 1e-140 RAB GTPase homolog A1C (.1) Potri.004G061000 [exp] 225 / 2e-74 AT4G18800 392 / 9e-141 RAB GTPase homolog A1D (.1) Potri.019G092500 [exp] 222 / 5e-73 AT5G60860 419 / 2e-151 RAB GTPase homolog A1F (.1) Potri.016G000400 [exp] 222 / 5e-73 AT1G07410 380 / 4e-136 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.001G374000 [exp] 221 / 6e-73 AT5G60860 417 / 1e-150 RAB GTPase homolog A1F (.1) Potri.006G000300 [exp] 221 / 9e-73 AT1G07410 400 / 4e-144 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.010G197200 [exp] 221 / 2e-72 AT1G07410 370 / 3e-132 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Potri.011G061300 [exp] 219 / 8e-72 AT5G60860 416 / 5e-150 RAB GTPase homolog A1F (.1) Potri.003G004100 [exp] 218 / 1e-71 AT1G09630 382 / 6e-137 ARABIDOPSIS RAB GTPASE A2A, RAB GTPase 11C (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10018013 pacid=23147878 polypeptide=Lus10018013 locus=Lus10018013.g ID=Lus10018013.BGIv1.0 annot-version=v1.0 ATGGCGGCGGTGACGGTGGACGGGTACGGCGACGAGGAGGAGGAGCAAGAGTGTGACTACCTGTTCAAGGCGGTGATGATCGGCGACTCGGCCGTGGGGA AGACGAACCTGCTGTCGAGATTCTCGAGGAACGAGTTCCGAGTCGACTCGAAGCCTACCATCGGCGTTGAGTTCGCTTACAGAGATGTTAAAGTCGGGAA CAAGCTCATCAAAGCTCAAATCTGGGACACCGCCGGCCAAGAAAGGTTCAGAGCAATAACGAGCTCGTACTATAGGGGAGCCCTGGGGGCGCTAGTGGTG TACGACATTTCCCGACGGGGGACGTTCCACAACGTCGAGAAATGGCTCGACGAGCTCCGCGGCTTCAGCAACTCCGACATGGTAGTCGTCCTCGTTGGGA ACAAGTCCGACGCGGCTCGCCACCTCCGCGAGGTTAGCGAGGAGGACGGCCGGAGTCTCGCGGAGGCGGAAGGGATCTCCTTCATGGAGACCTCCGCCAG GGACGACGTCAACGTAGACGCCGCCTTCCTCGAGATGATAGCCAAGATCCACCTCCGGAACACCTCCCACCGCTCACTGGACGGAGGCAGCAGCAGGGGA AGTAATTCCTCCGCCGCTGTGGCTCCAGTGTCATCGCTTCCTAGAGGGAGGGCCATTCTCAGCTTTGATGATGGTGGCGGTGATAAACAAGGCGGAGGAA CTAAACCGGCGGATTCAAGTTCTACTAGAAGTTGCTGTTCTTCCTGA
AA sequence Show only first row Show all	>Lus10018013 pacid=23147878 polypeptide=Lus10018013 locus=Lus10018013.g ID=Lus10018013.BGIv1.0 annot-version=v1.0 MAAVTVDGYGDEEEEQECDYLFKAVMIGDSAVGKTNLLSRFSRNEFRVDSKPTIGVEFAYRDVKVGNKLIKAQIWDTAGQERFRAITSSYYRGALGALVV YDISRRGTFHNVEKWLDELRGFSNSDMVVVLVGNKSDAARHLREVSEEDGRSLAEAEGISFMETSARDDVNVDAAFLEMIAKIHLRNTSHRSLDGGSSRG SNSSAAVAPVSSLPRGRAILSFDDGGGDKQGGGTKPADSSSTRSCCSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18200		AtRABA6b	RAB GTPase homolog A6B (.1)		Lus10018013 [exp]	0	1
AT5G67230		IRX14-L, I14H	IRREGULAR XYLEM 14-LIKE, IRREG...		Lus10019325 [exp]	4.5	0.9709
AT1G67510			Leucine-rich repeat protein ki...		Lus10015799 [exp]	4.9	0.9704
AT1G56430		ATNAS4	ARABIDOPSIS THALIANA NICOTIANA...		Lus10031416 [exp]	5.9	0.9491
AT3G61750			Cytochrome b561/ferric reducta...		Lus10010120 [exp]	8.3	0.9699
AT5G37478			TPX2 (targeting protein for Xk...		Lus10007382 [exp]	9.2	0.9690
AT4G28640	AUX_IAA	IAA11	indole-3-acetic acid inducible...		Lus10024958 [exp]	11.4	0.9437
AT1G79620			Leucine-rich repeat protein ki...		Lus10023848 [exp]	11.5	0.9660
					Lus10043486 [exp]	12.0	0.9627
AT3G61750			Cytochrome b561/ferric reducta...		Lus10012625 [exp]	12.2	0.9676
AT1G21510			unknown protein		Lus10018955 [exp]	12.7	0.9531

Compare expression of checked genes

Lus10018013 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.