Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G20990 240 / 4e-78 ATACA4, ACA4 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) AT1G08080 229 / 9e-74 ATACA7, ACA7 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) AT1G08065 211 / 1e-66 ATACA5, ACA5 alpha carbonic anhydrase 5 (.1) AT5G04180 210 / 4e-66 ATACA3, ACA3 alpha carbonic anhydrase 3 (.1) AT4G21000 207 / 3e-65 ATACA6, ACA6 A. THALIANA ALPHA CARBONIC ANHYDRASE 6, alpha carbonic anhydrase 6 (.1) AT3G52720 202 / 7e-63 CAH1, ATACA1, ACA1 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) AT2G28210 192 / 8e-60 ATACA2 alpha carbonic anhydrase 2 (.1) AT5G56330 152 / 4e-43 ATACA8, ACA8 A. THALIANA ALPHA CARBONIC ANHYDRASE 8, alpha carbonic anhydrase 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042013 [exp] 484 / 2e-173 AT4G20990 224 / 2e-72 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10042030 [exp] 283 / 1e-93 AT4G20990 313 / 9e-107 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10018034 [exp] 254 / 1e-82 AT4G20990 248 / 1e-81 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021455 [exp] 247 / 2e-80 AT1G08080 343 / 1e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10014412 [exp] 236 / 4e-76 AT1G08080 277 / 2e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10023915 [exp] 235 / 9e-76 AT1G08080 275 / 2e-92 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10016105 [exp] 234 / 3e-75 AT1G08080 333 / 1e-115 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Lus10031027 [exp] 228 / 2e-73 AT4G20990 235 / 2e-77 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Lus10021454 [exp] 228 / 6e-73 AT1G08080 300 / 1e-102 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043700 [exp] 283 / 2e-94 AT4G20990 306 / 4e-105 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047400 [exp] 270 / 1e-89 AT4G20990 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.006G047500 [exp] 252 / 2e-82 AT4G20990 276 / 5e-93 A. THALIANA ALPHA CARBONIC ANHYDRASE 4, alpha carbonic anhydrase 4 (.1) Potri.009G010200 [exp] 243 / 5e-79 AT1G08080 342 / 3e-119 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.004G212800 [exp] 241 / 4e-78 AT1G08080 347 / 3e-121 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.006G121900 [exp] 236 / 3e-76 AT1G08080 289 / 4e-98 A. THALIANA ALPHA CARBONIC ANHYDRASE 7, alpha carbonic anhydrase 7 (.1) Potri.016G079600 [exp] 187 / 5e-57 AT3G52720 271 / 8e-91 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2) Potri.006G212900 [exp] 182 / 3e-55 AT3G52720 261 / 5e-87 A. THALIANA ALPHA CARBONIC ANHYDRASE 1, alpha carbonic anhydrase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00194 [flax] [poplar] Carb_anhydrase Eukaryotic-type carbonic anhydrase
Representative CDS sequence Show only first row Show all	>Lus10018017 pacid=23147926 polypeptide=Lus10018017 locus=Lus10018017.g ID=Lus10018017.BGIv1.0 annot-version=v1.0 ATGCAATTCCGGATCGCCAAGACACTACCTTTTCATCTGTTTCTTCCTGCTTTTGGCACCAACCCATCAAAGATAGTACCTGAATTCGTAAAACCCAGAA CTGGAAAAACCTCAAATGGCTTGTCGCATAATCAGTTCTGCGTCAAAGATCTAAACTTTTTTGCTTCCATAAATAATCCCCCCATTGTAGCTCAGCTTTA CACATGCAAATTCAACATGCTGTCTAAGAAGGGAGAGATTATTAGTTTGGCTCTGTTGGTTCTCTGTCTCAGCATCTGCATTCCAGCCATCTGTGACAGC TCTGGACATGATAAGAAATGTGCTTCATTTACTTACAAACAAGGATGCGGCAAGAGAGGACCGAGCGAATGGGGATCATTGGGGCCAGATTGTGCAGCTT GTGAGATTGGGAGATTGCAGTCTCCCATTGATCTACCCTACCGTGGAGTTGAAGTTTCTACGCACTTGGGAAAACTGAAAACATACTACAAACCAGCTTG TGCTACTGTTCACAACAGAGGACACGGCATCATGGTGCAATGGGAAGAAGATGCTGGTAAAATTAGAATCAATGGAAGAAACTACAAGTTGGAACAATGC CATTGGCATACGCCCTCTGAGCACACATTTAATGGCTCAAGGCATGAGATGGAGCTACATCTGGTTCATAAAAGCTCGGACGATGAAACAGCTGTGATTG GAATAGTTTACAAGTATGGAAGTCCCGATCCATTTCTTTCTGGGCTGATTCATTACATAAAGAAGATAAAAAAGCAAGGAGAAGAGAGGGAAGCTGGGAT GGTGAATCCAGCAGAAGTAGTGAGGAAAACTGGGAATGGAAAATACTACAGATATGTTGGATCCTTAACTACTCCTCCATGCACTGAAGGAGTTGTGTGG ACACTTATGGAAAAAGTGATGACAGTTTCAAGAGCACAGGTCAAAACGTTGCAAGATGCAGTTGATGAGGGATTTAAAAACAATGCAAGACCAACTCAGG AATCAAATGGAAGGCGAATCCAGCTATACAATTCTCATGCCCTTCGGATTTAG
AA sequence Show only first row Show all	>Lus10018017 pacid=23147926 polypeptide=Lus10018017 locus=Lus10018017.g ID=Lus10018017.BGIv1.0 annot-version=v1.0 MQFRIAKTLPFHLFLPAFGTNPSKIVPEFVKPRTGKTSNGLSHNQFCVKDLNFFASINNPPIVAQLYTCKFNMLSKKGEIISLALLVLCLSICIPAICDS SGHDKKCASFTYKQGCGKRGPSEWGSLGPDCAACEIGRLQSPIDLPYRGVEVSTHLGKLKTYYKPACATVHNRGHGIMVQWEEDAGKIRINGRNYKLEQC HWHTPSEHTFNGSRHEMELHLVHKSSDDETAVIGIVYKYGSPDPFLSGLIHYIKKIKKQGEEREAGMVNPAEVVRKTGNGKYYRYVGSLTTPPCTEGVVW TLMEKVMTVSRAQVKTLQDAVDEGFKNNARPTQESNGRRIQLYNSHALRI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G20990		ATACA4, ACA4	A. THALIANA ALPHA CARBONIC ANH...		Lus10018017 [exp]	0	1
AT5G36000			unknown protein		Lus10010122 [exp]	1.0	0.9017
AT1G69480			EXS (ERD1/XPR1/SYG1) family pr...		Lus10019230 [exp]	1.7	0.8629
AT2G34930			disease resistance family prot...		Lus10033931 [exp]	13.1	0.8236
AT3G24130			Pectin lyase-like superfamily ...		Lus10007136 [exp]	14.2	0.7413
AT5G10750			Protein of unknown function (D...		Lus10020102 [exp]	14.4	0.8058
AT5G56510		APUM12	pumilio 12 (.1)		Lus10024793 [exp]	15.2	0.8856
AT1G04160		XI-B, XI-8, ATX...	MYOSIN XI-8, ARABIDOPSIS THALI...		Lus10032596 [exp]	16.7	0.7802
					Lus10042510 [exp]	18.2	0.7974
					Lus10014949 [exp]	31.1	0.8447
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10004687 [exp]	31.4	0.8587

Compare expression of checked genes

Lus10018017 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.