Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41430 103 / 1e-28 LSR1, CID1, ERD15 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) AT4G14270 71 / 4e-16 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042014 [exp] 232 / 9e-80 AT2G41430 99 / 1e-27 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10031029 [exp] 162 / 3e-52 AT2G41430 115 / 3e-34 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10035419 [exp] 157 / 1e-50 AT2G41430 113 / 2e-33 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10016358 [exp] 93 / 2e-24 AT2G41430 83 / 1e-20 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10019769 [exp] 90 / 2e-23 AT2G41430 91 / 1e-23 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10040964 [exp] 66 / 3e-14 AT2G41430 69 / 2e-15 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Lus10009847 [exp] 56 / 2e-10 AT2G41430 63 / 3e-13 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G041600 [exp] 140 / 3e-43 AT2G41430 121 / 1e-35 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.006G044600 [exp] 137 / 4e-42 AT2G41430 122 / 3e-36 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.001G023100 [exp] 94 / 8e-25 AT4G14270 89 / 3e-23 unknown protein Potri.003G202500 [exp] 87 / 2e-22 AT2G41430 81 / 5e-20 CTC-Interacting Domain 1, dehydration-induced protein (ERD15) (.1), dehydration-induced protein (ERD15) (.2), dehydration-induced protein (ERD15) (.3), dehydration-induced protein (ERD15) (.4), dehydration-induced protein (ERD15) (.5) Potri.010G182800 [exp] 63 / 3e-13 AT4G14270 65 / 6e-14 unknown protein Potri.008G074600 [exp] 62 / 1e-12 AT4G14270 66 / 2e-14 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07145 [flax] [poplar] PAM2 Ataxin-2 C-terminal region
Representative CDS sequence Show only first row Show all	>Lus10018018 pacid=23147991 polypeptide=Lus10018018 locus=Lus10018018.g ID=Lus10018018.BGIv1.0 annot-version=v1.0 ATGGCTTTGGTATCAGGAGGAAGATCAACTCTGAACCCGGATGCACCGCCATTCATTCCAGCTGCTTACAAGCAAGTAGAGGATTTCTCCCCGGAATGGT GGCAGCTGGTTACAACCACAACATGGTACAAAGACTACTGGATCAGCCAGCATCAAAACGAGGAAGGTCTCTACAACGATGCACAAGTTCAAGATCATGA TGATGGTGATCTTGACAGCAAAGATATAGCCGGGTTGCTGCCCGACACATTTGATCTTGATGTTGGGGCAGGGGTCGATTTCTCTGCTTTCGACGGTTTT GTTGAATCGTACGAAGCTGAGGTGGAGAATAGAACAACACCTCATACTGTACCCTCCTATGGAAACAGTTATGCAAGTTATGCAAGTTATGCAATTGGAG GAGGAGCTGTGGCTCCTCCGGCAGCAGCAGTAGTGAACCGAAGCTGA
AA sequence Show only first row Show all	>Lus10018018 pacid=23147991 polypeptide=Lus10018018 locus=Lus10018018.g ID=Lus10018018.BGIv1.0 annot-version=v1.0 MALVSGGRSTLNPDAPPFIPAAYKQVEDFSPEWWQLVTTTTWYKDYWISQHQNEEGLYNDAQVQDHDDGDLDSKDIAGLLPDTFDLDVGAGVDFSAFDGF VESYEAEVENRTTPHTVPSYGNSYASYASYAIGGGAVAPPAAAVVNRS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41430		LSR1, CID1, ERD...	CTC-Interacting Domain 1, dehy...		Lus10018018 [exp]	0	1
AT1G25275			unknown protein		Lus10006792 [exp]	2.0	0.8711
AT4G37420			Domain of unknown function (DU...		Lus10016022 [exp]	2.8	0.8238
AT2G46080			unknown protein		Lus10036385 [exp]	7.3	0.8684
AT4G17250			unknown protein		Lus10008508 [exp]	7.4	0.8430
AT5G07840		PIA1	phytochrome interacting ankyri...		Lus10018958 [exp]	9.8	0.8572
AT5G42300		UBL5	ubiquitin-like protein 5 (.1)		Lus10002228 [exp]	13.7	0.8521
AT1G71840			transducin family protein / WD...		Lus10033710 [exp]	15.6	0.8015
AT2G27830			unknown protein		Lus10009391 [exp]	18.2	0.7764
AT1G22040			Galactose oxidase/kelch repeat...		Lus10020960 [exp]	18.7	0.8417
AT1G68660			Ribosomal protein L12/ ATP-dep...		Lus10035041 [exp]	18.8	0.8187

Compare expression of checked genes

Lus10018018 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.