Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32630 592 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G39710 263 / 2e-78 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G05670 252 / 4e-74 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT2G15630 244 / 2e-72 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09820 242 / 1e-71 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G01110 242 / 1e-70 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12775 235 / 1e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G22470 233 / 4e-68 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12700 234 / 7e-68 RPF1 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) AT1G12300 231 / 3e-67 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042016 [exp] 1145 / 0 AT2G32630 600 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10007468 [exp] 267 / 6e-80 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 247 / 1e-71 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027914 [exp] 243 / 1e-70 AT5G39710 1025 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027916 [exp] 242 / 3e-70 AT5G39710 1038 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10026558 [exp] 244 / 5e-70 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013283 [exp] 237 / 2e-69 AT1G05670 785 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Lus10012068 [exp] 241 / 6e-69 AT5G39710 1028 / 0.0 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013841 [exp] 238 / 8e-68 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G008900 [exp] 729 / 0 AT2G32630 612 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.005G038400 [exp] 266 / 8e-81 AT1G12700 478 / 7e-161 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050500 [exp] 263 / 9e-80 AT1G12700 523 / 2e-178 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.006G271200 [exp] 262 / 3e-79 AT1G62930 475 / 3e-161 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G050400 [exp] 262 / 4e-79 AT1G12700 504 / 3e-171 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.010G035700 [exp] 265 / 5e-79 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.005G050180 [exp] 262 / 5e-79 AT1G12700 488 / 2e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.013G032600 [exp] 260 / 2e-78 AT1G12700 493 / 2e-166 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G045000 [exp] 260 / 3e-78 AT1G12700 502 / 4e-170 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.005G050300 [exp] 259 / 6e-78 AT1G12700 466 / 5e-156 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10018019 pacid=23147874 polypeptide=Lus10018019 locus=Lus10018019.g ID=Lus10018019.BGIv1.0 annot-version=v1.0 ATGGCATCTCAAAGACTCTTACAAGCATACAGAAACGGCATCCCATTTAGGCCCAGTTCAACATCAGATGAGAAAATGGCCAAAATGGTTGTACAACAGC TGAAGAAATCAGATTTCAAAGCTGTTAATGGCGTGTCATCTTCGAACCCTAATCTCAATTCTGATGTCACCTGCTTGGTACTCTCAAACCCTGATGTTGA TCCTCGTTCTTGCTTGTCTTTCTATAACTTTTTGCAAAATAATGACAAGTCTATTGCTCAAAAACCCAATGCTGACGCCACCATCATTCTCCTTTTGAGA TTATTCAAAGATAGGAAGTTTATGGACATGAGGAATGTGCTGACGAGGATTGTGTTAGGTGATGTTAGGTTCGAAGTTACTCAATTGATGCCATTGGTTA TTGCCAAATTTGATGAACCTATTTTTGCTGATAAGCTGTGTGATCTGCTGTTTAGAGTTTACGCCGATGCTAGGATGTTCGAAGAATGTCTTGAAGTATT TCGTTACATGATAGATAAAAATTTGAAGGTTGACGAAAGATCGTGTATCGTGTATCTGCTTGCTTCAAAGAGATGTGATGAAATGGACATGTGTTTAGGC CTTTTCAGAAGAATGGTCAAGTCTAATGTGGAGATTACTGTTTATTCATTGACCATTGTGATTGACGGTCTGTGTAGAAAAGGAAAGGTTACAAGAGCTA AAGAATTGATGGTTGAAATGGGTGCGAAAGGAATTAAACCAAATGTGATTACCTATAATACCATTTTAAATGGATTTATGAAAAGTAAGGATCTTTTTGG TGTTGAAGAGATCTCGAGACTGATGGAGAAGGATAATGTTGCATACAATGTTGCTACATATACAATATTGGTTAAATATCTTGGTGATAGTGGCAAGGCT GAGGAAGCTGAGAGGTTGTTCAAAGAAATGAGTGAAAGAAATGTCGAAGCGGATATTCATGTGTACACATCCATGATCAGTTGCAGTTCTAAAGTTGGGA ACATGAGAAGAGCTTTTGCTTTGTTTGATGAGCTCAGCGAGAAAGGCCTTGCTCCAAATTCTCACACTTATGGGGCATTGATCGATGGTGTCTGCAAGGC TGGCCAGATGGAAGCAGCTACAATGTTGTTATCTAAGATGCAATCCGAAGGGTTAGATATGGATCCGCGAATAATTAACTCACTGATTGATGGTTATTGT AAATTAGGCATGATGGACGAGGCTCTAAGAATATATGATACAATGGAAAAGAAAGGTTTCAAGGCAGATAACTATACTTATAACATAATTGCTAGTGGAT TCTGTAAAGCAAACAAACTCGAGGAAGCAAAGAGCTGGTTGTTTGGAATGATCGAAAAGGGCGGAACACCTAATCCGGTGAATTTCACCACTTTGATTAA CATCTACTGCAAAGAAGGGAATATCCTGGAAGCAAAGAAGCTATTTCAAGATATGAAAAGGAAATCGGTGAGGCCTACCCTTATTACTTACAATGCTATG ACTGATGGATATTGTAAGCAGGGCAAGATTTCTGAAGCTTACAAGCTAAAGGATGAAATGGTTGATATGGGGATTCTGCCTGACATATACACATATACAT CACTTATTAATGGGGAGTGTATTGCTGGGAATGTGGATGAAGCATTGAAACTGTTCAATGAAGCTCGTGAAAGTGGCCTGACAATCAATATAGTCACTTA CACCGCAATAATTTCAGGCCTGTCAAAGGAGGGACGATCTGAAGAAGCTTTTAAATTGTATGACGAGGCTATGGAGGCTGGCCTGATTCCTGATGACAAA TTGTATGCATTACTTGTTGGCAGCCTTCACAAAAGTTAG
AA sequence Show only first row Show all	>Lus10018019 pacid=23147874 polypeptide=Lus10018019 locus=Lus10018019.g ID=Lus10018019.BGIv1.0 annot-version=v1.0 MASQRLLQAYRNGIPFRPSSTSDEKMAKMVVQQLKKSDFKAVNGVSSSNPNLNSDVTCLVLSNPDVDPRSCLSFYNFLQNNDKSIAQKPNADATIILLLR LFKDRKFMDMRNVLTRIVLGDVRFEVTQLMPLVIAKFDEPIFADKLCDLLFRVYADARMFEECLEVFRYMIDKNLKVDERSCIVYLLASKRCDEMDMCLG LFRRMVKSNVEITVYSLTIVIDGLCRKGKVTRAKELMVEMGAKGIKPNVITYNTILNGFMKSKDLFGVEEISRLMEKDNVAYNVATYTILVKYLGDSGKA EEAERLFKEMSERNVEADIHVYTSMISCSSKVGNMRRAFALFDELSEKGLAPNSHTYGALIDGVCKAGQMEAATMLLSKMQSEGLDMDPRIINSLIDGYC KLGMMDEALRIYDTMEKKGFKADNYTYNIIASGFCKANKLEEAKSWLFGMIEKGGTPNPVNFTTLINIYCKEGNILEAKKLFQDMKRKSVRPTLITYNAM TDGYCKQGKISEAYKLKDEMVDMGILPDIYTYTSLINGECIAGNVDEALKLFNEARESGLTINIVTYTAIISGLSKEGRSEEAFKLYDEAMEAGLIPDDK LYALLVGSLHKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32630			Pentatricopeptide repeat (PPR-...		Lus10018019 [exp]	0	1
AT5G27410			D-aminoacid aminotransferase-l...		Lus10029984 [exp]	1.4	0.8845
AT4G11640		ATSR	serine racemase (.1)		Lus10008490 [exp]	5.3	0.8955
AT4G32050			neurochondrin family protein (...		Lus10023067 [exp]	7.7	0.8608
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10041689 [exp]	7.9	0.8689
AT5G27680		RECQSIM	RECQ helicase SIM (.1)		Lus10004503 [exp]	8.0	0.8711
AT3G44600		AtCYP71, CYP71	cyclophilin 71, cyclophilin71 ...		Lus10006271 [exp]	10.5	0.8616
AT5G39350			Tetratricopeptide repeat (TPR)...		Lus10008136 [exp]	10.8	0.8580
AT2G23890			HAD-superfamily hydrolase, sub...		Lus10019962 [exp]	11.2	0.8734
AT5G14590			Isocitrate/isopropylmalate deh...		Lus10013090 [exp]	13.4	0.8838
AT4G39910		ATUBP3	ubiquitin-specific protease 3 ...		Lus10014333 [exp]	13.9	0.8801

Compare expression of checked genes

Lus10018019 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.