Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41130 205 / 2e-65 bHLH bHLH106 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G56770 197 / 8e-63 bHLH bHLH107 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G68810 141 / 1e-39 bHLH bHLH030 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G40200 124 / 6e-34 bHLH bHLH051 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G25710 124 / 2e-33 bHLH TMO5, BHLH32, bHLH032, ATAIG1 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) AT4G38070 84 / 8e-18 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G00050 57 / 4e-09 bHLH bHLH016, UNE10 unfertilized embryo sac 10, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 57 / 5e-09 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G28790 56 / 8e-09 bHLH bHLH023 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT4G28815 53 / 6e-08 bHLH bHLH127 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042017 [exp] 422 / 1e-150 AT2G41130 204 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10034271 [exp] 138 / 9e-39 AT1G68810 218 / 2e-68 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10041493 [exp] 138 / 1e-38 AT3G25710 201 / 2e-62 TARGET OF MONOPTEROS 5, basic helix-loop-helix 32 (.1) Lus10021711 [exp] 132 / 4e-36 AT1G68810 310 / 1e-103 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10035056 [exp] 132 / 5e-36 AT1G68810 321 / 6e-108 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007502 [exp] 127 / 1e-35 AT2G40200 163 / 8e-50 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10028978 [exp] 115 / 5e-31 AT2G40200 157 / 8e-48 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10013917 [exp] 111 / 7e-29 AT2G40200 122 / 2e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10001885 [exp] 105 / 8e-27 AT1G68810 124 / 1e-33 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G037100 [exp] 261 / 8e-88 AT2G41130 229 / 2e-75 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.016G035400 [exp] 258 / 3e-86 AT2G41130 231 / 2e-76 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G116000 [exp] 144 / 6e-41 AT1G68810 259 / 5e-84 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G130000 [exp] 138 / 2e-38 AT1G68810 269 / 1e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G070800 [exp] 125 / 1e-34 AT2G40200 132 / 2e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G186700 [exp] 124 / 5e-34 AT2G40200 132 / 3e-37 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.019G089000 [exp] 122 / 3e-33 AT1G68810 122 / 2e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G105300 [exp] 118 / 8e-32 AT3G56770 110 / 1e-29 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.013G117600 [exp] 118 / 1e-31 AT3G56770 112 / 8e-30 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.004G055700 [exp] 111 / 4e-29 AT2G41130 120 / 1e-32 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [flax] [poplar] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Lus10018020 pacid=23147862 polypeptide=Lus10018020 locus=Lus10018020.g ID=Lus10018020.BGIv1.0 annot-version=v1.0 ATGCAGCATCCAGCAGCAGGAGAAAACTACTGGGTGAATGATTCCCACAGTTATTTGTTCCGTTTGCTTGCTGGGGAGAACGGGTCAGCCTTCCAACAAC AGCAACAGCAGAATGGGTTTGTTCATCAAAATGGCTTGATCTGCAGCGGCAACAACAACAGTTATAATGATAATCAAGCTGATTCTTCTTCTTGCGATTA TAGTAATGATCAGTACTATCATCACCGTCATCATCAGTTATCTGGGAGTGGTTCTGCGATCACTGCGGGAGAAAATTCGAGGACGACGACGCCTCAGGAT AGAGCGTACGCAGCACTGCAGAATCATAAGGAAGCTGAGAAGAGAAGGAGGGAGAGGATCAATTCTCATCTTGACAAGCTCCGAGCACTCCTTCCTTGCA ACTCCAAGACAGATAAAGCATCACTACTGGCGAAGGTGGTGGAGCGAGTGAAAGAGCTGAAACAGCAAACCACCGAGATCCAAGGCCTCGACACCTTCCC GTCGGAGGTCGACGAAATCACGGTGGCGGAAGAATACGGCGGCGGCGGGAGGAATAATAACATGGTGTACAGGGCATCGGTGTGCTGCGAGGACAGGTCG GAACTGCTGCCGGAGTTGATAGAGATATTCAAGTCCCTCCACCTCAAGACCGTCAGGGCCGAGATGGTGACGCTCGCCGGTAGGACACGTAGCGTCTTGA TGGTGGCGCCCGCGGAAGATCATGCCGGCGTTGAGTCCATTCATTTCCTGCAGGCTGCGCTCAAGTCTTTGCTGGAGCGTGGTAATAACTCTGGTGGTAC TAATGAGCCCTCTAAGAGGAGGAGGCTCTTGAAATCTTGA
AA sequence Show only first row Show all	>Lus10018020 pacid=23147862 polypeptide=Lus10018020 locus=Lus10018020.g ID=Lus10018020.BGIv1.0 annot-version=v1.0 MQHPAAGENYWVNDSHSYLFRLLAGENGSAFQQQQQQNGFVHQNGLICSGNNNSYNDNQADSSSCDYSNDQYYHHRHHQLSGSGSAITAGENSRTTTPQD RAYAALQNHKEAEKRRRERINSHLDKLRALLPCNSKTDKASLLAKVVERVKELKQQTTEIQGLDTFPSEVDEITVAEEYGGGGRNNNMVYRASVCCEDRS ELLPELIEIFKSLHLKTVRAEMVTLAGRTRSVLMVAPAEDHAGVESIHFLQAALKSLLERGNNSGGTNEPSKRRRLLKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10018020 [exp]	0	1
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10022818 [exp]	2.8	0.8447
AT5G58530			Glutaredoxin family protein (....		Lus10007517 [exp]	6.0	0.7985
AT2G17525			Pentatricopeptide repeat (PPR)...		Lus10016688 [exp]	11.4	0.7640
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10016722 [exp]	12.2	0.8004
AT2G41130	bHLH	bHLH106	basic helix-loop-helix (bHLH) ...		Lus10042017 [exp]	12.5	0.7237
AT2G34710	HD	ATHB14, PHB-1D,...	PHABULOSA 1D, PHABULOSA, ARABI...		Lus10023357 [exp]	16.8	0.7634
AT3G24660		TMKL1	transmembrane kinase-like 1 (....		Lus10011886 [exp]	20.4	0.7693
AT1G26355		SP1L1	SPIRAL1-like1 (.1)		Lus10004642 [exp]	22.4	0.7460
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	25.2	0.7568
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Lus10036016 [exp]	26.1	0.6986

Compare expression of checked genes

Lus10018020 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.