Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57080 280 / 6e-96 RPB5B, NRPE5 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT2G41340 260 / 4e-88 RPB5D "RNA polymerase II fifth largest subunit, D", RNA polymerase II fifth largest subunit, D (.1) AT3G54490 202 / 3e-65 RPB5E "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) AT3G22320 135 / 2e-39 RPB5A, NRPD5, NRPB5, ATRPABC24.3 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) AT5G57980 114 / 3e-31 RPB5C "RNA polymerase II fifth largest subunit, C", RNA polymerase II fifth largest subunit, C (.1) AT3G16680 44 / 7e-06 DNA binding;DNA-directed RNA polymerases (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042019 [exp] 434 / 4e-157 AT3G57080 239 / 4e-80 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10024169 [exp] 202 / 6e-65 AT3G54490 221 / 7e-73 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Lus10039554 [exp] 179 / 1e-55 AT3G54490 184 / 6e-58 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Lus10013639 [exp] 141 / 1e-41 AT3G22320 342 / 3e-121 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Lus10001335 [exp] 141 / 1e-41 AT3G22320 342 / 3e-121 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G038500 [exp] 330 / 2e-115 AT3G57080 286 / 1e-98 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, B, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Potri.001G025500 [exp] 252 / 6e-85 AT3G54490 249 / 1e-83 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.006G161600 [exp] 140 / 2e-41 AT3G22320 365 / 2e-130 RNA POLYMERASE II FIFTH LARGEST SUBUNIT, A, Eukaryotic rpb5 RNA polymerase subunit family protein (.1) Potri.003G200450 [exp] 91 / 4e-23 AT3G54490 92 / 4e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.T127006 [exp] 88 / 5e-22 AT3G54490 92 / 5e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1) Potri.001G179300 [exp] 72 / 4e-16 AT3G54490 92 / 6e-24 "RNA polymerase II fifth largest subunit, E", RNA polymerase II fifth largest subunit, E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01191 [flax] [poplar] RNA_pol_Rpb5_C RNA polymerase Rpb5, C-terminal domain CL0236 [flax] [poplar] PDDEXK PF03871 [flax] [poplar] RNA_pol_Rpb5_N RNA polymerase Rpb5, N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10018022 pacid=23147962 polypeptide=Lus10018022 locus=Lus10018022.g ID=Lus10018022.BGIv1.0 annot-version=v1.0 ATGGAAGAGAACGGTGCGGCGGCGACGAACGGAGATGTCGAAGGAAGCGGCGCCACGGCCGCTTTTCAAATGGACGAAATGAAGAAGTGCTTGAGCAGCT ACATCGACGACGGCAGCCCCGAGACTCACAGGTACTTCTTGGCTCGGAGAACAGTACTGGAGATGTTGAAAGATAGGGGCTATTACGTCCCTGCATCCGA CATCTCCGTCTCCTTGCAAGAGTTCCGCTCCATTCATGACCAGAACATCGACGTTGACCGCCTCAAGTTCTCCGCCACTCACCAGACTGATCCTTCCAAT ACGATGATGGTCGTATTTGGTGGAACTAGCGTGATTAAGGTTAATACGGTTCGTCTAATCGCTGCTCAGATTGTTAATAGAGACAGCTTAACTGGGCTGA TACTGATCTTGCAAAACCAAATAACGAAACAAGCTGAGAAAGCACTCAGGCTGTTCTCATTCAAGGTTGAGATATTTCAGATTACTGACTTGCTCGTCAA CATCACTAAGCATGTGCTGAAGCCGAGGCATCAGGTGCTGACGGAAGAGGAGAAAAAACAGCTCTTAATCAAGTACAATGTAGTAGACAAGCAGCTTCCG CGGCTGTTAACATCGGATGCAATCGCTCGATATTATGGACTGGAGAAGGGTCAAGTGGTTAAGGTGACATACACCGGTGAAATCACCGAGTCTCATGTCA CGTACAGATGCGTCTGGTAA
AA sequence Show only first row Show all	>Lus10018022 pacid=23147962 polypeptide=Lus10018022 locus=Lus10018022.g ID=Lus10018022.BGIv1.0 annot-version=v1.0 MEENGAAATNGDVEGSGATAAFQMDEMKKCLSSYIDDGSPETHRYFLARRTVLEMLKDRGYYVPASDISVSLQEFRSIHDQNIDVDRLKFSATHQTDPSN TMMVVFGGTSVIKVNTVRLIAAQIVNRDSLTGLILILQNQITKQAEKALRLFSFKVEIFQITDLLVNITKHVLKPRHQVLTEEEKKQLLIKYNVVDKQLP RLLTSDAIARYYGLEKGQVVKVTYTGEITESHVTYRCVW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57080		RPB5B, NRPE5	RNA POLYMERASE II FIFTH LARGES...		Lus10018022 [exp]	0	1
AT2G42770			Peroxisomal membrane 22 kDa (M...		Lus10001421 [exp]	9.0	0.7584
AT5G53020			Ribonuclease P protein subunit...		Lus10022396 [exp]	9.9	0.7606
AT1G62400		HT1	high leaf temperature 1, Prote...		Lus10020018 [exp]	12.2	0.7786
AT5G13440			Ubiquinol-cytochrome C reducta...		Lus10028416 [exp]	15.9	0.7272
AT3G55120		A11, CFI, TT5	TRANSPARENT TESTA 5, CHALCONE ...		Lus10030309 [exp]	16.7	0.7418
AT5G11340			Acyl-CoA N-acyltransferases (N...		Lus10013120 [exp]	17.5	0.7535
AT3G49710			Pentatricopeptide repeat (PPR)...		Lus10006743 [exp]	17.9	0.7325
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Lus10005310 [exp]	20.1	0.7285
AT1G55805			BolA-like family protein (.1)		Lus10002318 [exp]	24.4	0.7475
					Lus10025227 [exp]	25.8	0.7523

Compare expression of checked genes

Lus10018022 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.