Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27170 106 / 6e-24 transmembrane receptors;ATP binding (.1.2) AT1G27180 105 / 9e-24 disease resistance protein (TIR-NBS-LRR class), putative (.1) AT5G48770 105 / 1e-23 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G36930 99 / 9e-22 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) AT1G72890 97 / 2e-21 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) AT4G16890 98 / 3e-21 BAL, SNC1 SUPPRESSOR OF NPR1-1, CONSTITUTIVE 1, BALL, disease resistance protein (TIR-NBS-LRR class), putative (.1) AT1G17600 97 / 6e-21 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G12010 96 / 1e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT5G45220 95 / 1e-20 Disease resistance protein (TIR-NBS-LRR class) family (.1) AT4G19510 94 / 5e-20 Disease resistance protein (TIR-NBS-LRR class) (.1), Disease resistance protein (TIR-NBS-LRR class) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006928 [exp] 272 / 9e-85 AT5G36930 165 / 5e-43 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10042020 [exp] 232 / 5e-70 AT1G72890 147 / 3e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10019142 [exp] 219 / 1e-65 AT1G72890 140 / 1e-36 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10006929 [exp] 149 / 2e-41 AT1G72890 146 / 1e-39 Disease resistance protein (TIR-NBS class) (.1), Disease resistance protein (TIR-NBS class) (.2) Lus10014671 [exp] 142 / 6e-39 AT5G36930 144 / 4e-39 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Lus10011104 [exp] 112 / 9e-26 AT5G17680 574 / 0.0 disease resistance protein (TIR-NBS-LRR class), putative (.1) Lus10030839 [exp] 112 / 1e-25 AT4G12010 552 / 7e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1) Lus10015453 [exp] 108 / 3e-25 AT1G27170 282 / 5e-84 transmembrane receptors;ATP binding (.1.2) Lus10013729 [exp] 108 / 9e-25 AT5G36930 310 / 2e-92 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.019G001600 [exp] 131 / 4e-32 AT5G36930 721 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T011750 [exp] 124 / 5e-30 AT5G36930 551 / 2e-176 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.017G105501 [exp] 115 / 5e-30 AT5G36930 158 / 4e-45 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001602 [exp] 123 / 1e-29 AT5G36930 778 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.013G037599 [exp] 123 / 1e-29 AT5G36930 627 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G019053 [exp] 123 / 1e-29 AT5G36930 655 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G001314 [exp] 116 / 2e-29 AT5G36930 183 / 1e-52 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.007G143100 [exp] 117 / 3e-29 AT5G36930 234 / 1e-69 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.T005501 [exp] 122 / 4e-29 AT5G36930 612 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2) Potri.019G003942 [exp] 120 / 1e-28 AT5G36930 591 / 0.0 Disease resistance protein (TIR-NBS-LRR class) family (.1), Disease resistance protein (TIR-NBS-LRR class) family (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0173 [flax] [poplar] STIR PF01582 [flax] [poplar] TIR TIR domain
Representative CDS sequence Show only first row Show all	>Lus10018024 pacid=23147890 polypeptide=Lus10018024 locus=Lus10018024.g ID=Lus10018024.BGIv1.0 annot-version=v1.0 ATGACCGTAACGTACACATTAGGCGGCGGGGGCGGCCAACAACCATCAACTACCTCTCCTCCTACTCCACCGCCGCCACCGACGAAGCTCCTCCCTAGTT ACGACGTCTTCCTCAGCTTCAGAGGGAGAGACATCCGCGGGAATTTCGCAGAAGATCTCTACGAAGCACTGAACAAGGAGGTCAACGCTTTCATGGACAC CAAGAAGAAACCCATTGGGTACCCACTGAGCACGCTATTCGAAGCGATCAACCGGTCAAAGGCGTCGGTCGTCGTGTTCTCCCCCGGATTCGCCGATTCG AAGTGGTGCCTGGCCGAGTTGGTCAGGATCGTCTGGCGAGTTCAGAGGAAACTACACAGGAGCATGCCTGTGTTCTTCCACGTGTCAACTCACGAAGTCG GCCACCAGTCCGGGACTTACGAAAAGGCCTTTGAGAAGCATGAGGTTGATTTCCCGTCGAAAGTTAAAGGCTGGAGGAATGCTATGGCCGCGGCGTCCAA GTATTCCGGATGGCGTAGTTCCGACCATGAATCCGTTGCTCGTGGACTAGAAATGTGTGCATACGATGCTAATATTATCATGACTACTATTACTATAAGC TTTCTCCAACAATGCAGCACAGAGGCCAGCTTAATAAAAGATATAACCAGGCACGTAGTACAATTTACCAAGGACAGTGCTGCCGCAGGATCCGGATCCG GGCCCGGATCATCCACTGACGCCTTTTTCGCCTACCAAGAACAGGAAAGCACCGCCGTCGCATGGATCTGCAGAATTGGCGGCTTCGAAAGCGCCAACTC AGCGAAGCTCGTCTACCACAGTATACTCGCCCGCGCCAGATCGCCACCCTCTTCCTTGCATCATGCTAACCGATACGACGCGTCGTATTTGTTCCAGTAC TGCGATCCCGCTGTAACCGAGCACAACCCGAACCCGGAGTTGGAATGGACCAGGAAATTACCGGACAATATCGACGTGGTACGAACCAAGCACGCAACGG ATAACAAGAAGGTCCTAGCAGCCGTCGACGGCATGGAGAAGCTATCGAACCTCCTGGTTTTCGCCACAAAAACCGGTTGGTTCGGTACGGGTAGCCAGGT TGTTATCTCGACCGTTGACCGTCCCAAGAATCTCTTGGAAGTTGTCCACGTCGACATGATGGATGGTTATAAACATGAAAATGGGAACAAGTACTTGGAC GTTGCTTGCTTTGTAAAGGAGAAGACTAGTGTCGAGGAAATACTGAAGCACGTAGAGAAATTAATTACGGCTGGATCAACATCGTCGGAGGCTGGTCGGA AAGTTCATACCTGTACGTTTGAGGGCGTTGGGATGAGGGATAACGGGAAGCTGGAAATTATGGTCACAGAACGACGTCGTAAGCTTCCAGTTGTGGCCGT GAGTAAGAAGTTTGATATTGTTAGTTTGTTTGCTTCCTGTTTAGGGTTTGTACCGGCGGAAGAAGCATATGATCGTGCACCGTCCTACAATTAA
AA sequence Show only first row Show all	>Lus10018024 pacid=23147890 polypeptide=Lus10018024 locus=Lus10018024.g ID=Lus10018024.BGIv1.0 annot-version=v1.0 MTVTYTLGGGGGQQPSTTSPPTPPPPPTKLLPSYDVFLSFRGRDIRGNFAEDLYEALNKEVNAFMDTKKKPIGYPLSTLFEAINRSKASVVVFSPGFADS KWCLAELVRIVWRVQRKLHRSMPVFFHVSTHEVGHQSGTYEKAFEKHEVDFPSKVKGWRNAMAAASKYSGWRSSDHESVARGLEMCAYDANIIMTTITIS FLQQCSTEASLIKDITRHVVQFTKDSAAAGSGSGPGSSTDAFFAYQEQESTAVAWICRIGGFESANSAKLVYHSILARARSPPSSLHHANRYDASYLFQY CDPAVTEHNPNPELEWTRKLPDNIDVVRTKHATDNKKVLAAVDGMEKLSNLLVFATKTGWFGTGSQVVISTVDRPKNLLEVVHVDMMDGYKHENGNKYLD VACFVKEKTSVEEILKHVEKLITAGSTSSEAGRKVHTCTFEGVGMRDNGKLEIMVTERRRKLPVVAVSKKFDIVSLFASCLGFVPAEEAYDRAPSYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G18350			Disease resistance protein (TI...		Lus10018024 [exp]	0	1
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	5.7	0.9452
AT4G39780	AP2_ERF		Integrase-type DNA-binding sup...		Lus10019665 [exp]	8.7	0.9431
AT4G36670		AtPMT6, AtPLT6	polyol/monosaccharide transpor...		Lus10041731 [exp]	12.0	0.9286
AT5G67400		RHS19	root hair specific 19 (.1)		Lus10035204 [exp]	12.0	0.9387
AT1G72890			Disease resistance protein (TI...		Lus10019142 [exp]	15.0	0.9317
AT2G23755			unknown protein		Lus10019660 [exp]	18.7	0.9326
AT4G09460	MYB	ATMYB6, ATMYB8	myb domain protein 6 (.1)		Lus10000411 [exp]	18.9	0.9242
AT2G36950			Heavy metal transport/detoxifi...		Lus10022617 [exp]	19.6	0.9367
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	19.7	0.9334
AT2G14095			unknown protein		Lus10012704 [exp]	23.7	0.9257

Compare expression of checked genes

Lus10018024 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.