Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57070 269 / 7e-87 Glutaredoxin family protein (.1) AT2G41330 248 / 5e-79 Glutaredoxin family protein (.1) AT5G13810 170 / 3e-50 Glutaredoxin family protein (.1) AT3G28850 159 / 2e-44 Glutaredoxin family protein (.1) AT5G39865 152 / 2e-42 Glutaredoxin family protein (.1) AT5G58530 131 / 2e-35 Glutaredoxin family protein (.1) AT5G03870 126 / 8e-33 Glutaredoxin family protein (.1) AT1G32760 115 / 2e-29 Glutaredoxin family protein (.1) AT1G64500 112 / 1e-27 Glutaredoxin family protein (.1) AT3G11773 106 / 2e-27 Thioredoxin superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042021 [exp] 533 / 0 AT3G57070 252 / 2e-80 Glutaredoxin family protein (.1) Lus10024164 [exp] 177 / 6e-53 AT5G13810 259 / 2e-86 Glutaredoxin family protein (.1) Lus10039537 [exp] 177 / 8e-53 AT5G13810 261 / 4e-87 Glutaredoxin family protein (.1) Lus10001669 [exp] 164 / 3e-47 AT5G39865 340 / 1e-115 Glutaredoxin family protein (.1) Lus10017335 [exp] 152 / 9e-43 AT5G39865 345 / 1e-117 Glutaredoxin family protein (.1) Lus10007256 [exp] 148 / 1e-40 AT5G39865 358 / 1e-121 Glutaredoxin family protein (.1) Lus10040949 [exp] 135 / 9e-38 AT5G58530 164 / 2e-50 Glutaredoxin family protein (.1) Lus10007517 [exp] 134 / 4e-37 AT5G58530 153 / 1e-45 Glutaredoxin family protein (.1) Lus10013597 [exp] 130 / 6e-36 AT5G06470 179 / 2e-56 Glutaredoxin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G041800 [exp] 275 / 4e-89 AT3G57070 340 / 3e-114 Glutaredoxin family protein (.1) Potri.016G038600 [exp] 249 / 2e-79 AT3G57070 317 / 5e-105 Glutaredoxin family protein (.1) Potri.003G198100 [exp] 174 / 4e-52 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.T125406 [exp] 174 / 4e-52 AT5G13810 294 / 1e-100 Glutaredoxin family protein (.1) Potri.001G026600 [exp] 168 / 1e-49 AT5G13810 312 / 1e-107 Glutaredoxin family protein (.1) Potri.009G075600 [exp] 154 / 2e-44 AT5G58530 199 / 3e-63 Glutaredoxin family protein (.1) Potri.001G280400 [exp] 148 / 3e-42 AT5G58530 234 / 4e-77 Glutaredoxin family protein (.1) Potri.017G081600 [exp] 151 / 1e-41 AT3G28850 355 / 3e-119 Glutaredoxin family protein (.1) Potri.008G072200 [exp] 136 / 1e-37 AT5G58530 177 / 7e-55 Glutaredoxin family protein (.1) Potri.006G201300 [exp] 130 / 3e-35 AT5G06470 213 / 1e-68 Glutaredoxin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [flax] [poplar] Thioredoxin PF00462 [flax] [poplar] Glutaredoxin Glutaredoxin
Representative CDS sequence Show only first row Show all	>Lus10018025 pacid=23147966 polypeptide=Lus10018025 locus=Lus10018025.g ID=Lus10018025.BGIv1.0 annot-version=v1.0 ATGGGTTGCTCTGTTTCCAGATTCACCATTTTCTCCGCATTCCATTCCCATCCTCTTCTCAATCAATCGTCGCCGTCACTCATCCTCCGCCACCATGCCT CCTCCAGTACTACTACTACTACTCCACAATCCCACCACTCCTCTTCTCCTCCTCCTCCTCCTCCTCCTGGTAAAAGCCACCGCCGAGCTATGTCTATCCC ATCCCCACTCGTCCACCACCCTCCCTCCGGTAATGGAGATTCCGACCACCTTGTCTTCTTAACCTCCACCTCCTACGGCTCCGCCCTCCACAAATCCGAC CAACAACAACACTACCACCACTCACCTGACTCCGTCCCTTCCCCTGACTCCGTTATCAACGCTTGGGAGCTCATGGATGGTCTCGACGATGATTCCAATT CCGAATTGGCTCAATCTCCTCTGCCGACAAAATGTTCTTCCCAAAATCAGGGCTCCCCCGCCGAAAATGAAAAACCTAATTCCCAATCGAAGCCGCTGTG GAAGCATTTCTCCGAGGAGTCATTTCTGCTCAAATTGGACCCGGTAATAGTCTCCAGTTACCGGCGCGCATTGTGCGCTAGGCAATTACGAGTCGAAACC AAGGAATTGCAATTACCCACCAAATCCAAGGAAACAAAAACAACCGATCGCCACTCGCCTCCTCCGCCGGTCTCCGTCGCCGTCGGCGGCGGAGGCGGAG GAATAGTCGTGTACTTCACGAGTCTGAGGGGAATACGGAAGACGTACGAGGACAGCTGCTCGGTCCGGACGATACTCCGGGGGCTGCGGGTGGCCGTCGA CGAGAGGGACGTGTCGATGCACTCGGCGTACGGGAAAGAGCTGAATGGGTTGTTGTCACCGGCGGCAGAGAGAGGGAGGCTGCCGCAGGTGTTCATCGGA GGGAAGCACGTGGGAGGGGCGGATGAGATCCGGCGTATGAACGACTCCGGGGAGCTGTCGGAGCTGGTGAAGGGGTTTCCTAGCTGCGGAGGGGTGTGCG GTGGTTGTGGGGATGCGAGATTTGTGATGTGCTGTAATTGTAACGGAAGCAGGAAAGTGTTCGATGAAAAGGAGGAAAGGCTGCGGCGGTGCTCCGATTG CAATGAGAATGGGTTGATTCGGTGCCGGAGCTGCTCCGTTTGCTGA
AA sequence Show only first row Show all	>Lus10018025 pacid=23147966 polypeptide=Lus10018025 locus=Lus10018025.g ID=Lus10018025.BGIv1.0 annot-version=v1.0 MGCSVSRFTIFSAFHSHPLLNQSSPSLILRHHASSSTTTTTPQSHHSSSPPPPPPPGKSHRRAMSIPSPLVHHPPSGNGDSDHLVFLTSTSYGSALHKSD QQQHYHHSPDSVPSPDSVINAWELMDGLDDDSNSELAQSPLPTKCSSQNQGSPAENEKPNSQSKPLWKHFSEESFLLKLDPVIVSSYRRALCARQLRVET KELQLPTKSKETKTTDRHSPPPPVSVAVGGGGGGIVVYFTSLRGIRKTYEDSCSVRTILRGLRVAVDERDVSMHSAYGKELNGLLSPAAERGRLPQVFIG GKHVGGADEIRRMNDSGELSELVKGFPSCGGVCGGCGDARFVMCCNCNGSRKVFDEKEERLRRCSDCNENGLIRCRSCSVC

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57070			Glutaredoxin family protein (....		Lus10018025 [exp]	0	1
AT4G11350			Protein of unknown function (D...		Lus10036382 [exp]	1.7	0.8832
AT4G00231		MEE50	maternal effect embryo arrest ...		Lus10007356 [exp]	1.7	0.8731
AT2G44830			Protein kinase superfamily pro...		Lus10028208 [exp]	2.4	0.8777
AT3G06130			Heavy metal transport/detoxifi...		Lus10021941 [exp]	6.3	0.8579
AT2G44530			Phosphoribosyltransferase fami...		Lus10012074 [exp]	8.1	0.8229
AT3G06130			Heavy metal transport/detoxifi...		Lus10041228 [exp]	8.1	0.8468
AT5G23040		CDF1	CELL GROWTH DEFECT FACTOR 1, P...		Lus10000868 [exp]	8.9	0.8334
AT2G44830			Protein kinase superfamily pro...		Lus10042911 [exp]	10.0	0.8482
AT4G01370		ATMPK4	MAP kinase 4 (.1)		Lus10036384 [exp]	10.2	0.8148
AT5G24240			Phosphatidylinositol 3- and 4-...		Lus10018104 [exp]	12.0	0.8238

Compare expression of checked genes

Lus10018025 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.