Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14965 335 / 4e-117 ATMAPR4 membrane-associated progesterone binding protein 4 (.1) AT2G24940 86 / 3e-21 ATMAPR2 membrane-associated progesterone binding protein 2 (.1) AT3G48890 77 / 7e-17 MSBP2, ATMP2, ATMAPR3 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) AT5G52240 70 / 2e-14 ATMAPR5, ATMP1, MSBP1 ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 5, membrane steroid binding protein 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042022 [exp] 446 / 1e-160 AT4G14965 357 / 5e-126 membrane-associated progesterone binding protein 4 (.1) Lus10002241 [exp] 82 / 6e-20 AT2G24940 172 / 1e-57 membrane-associated progesterone binding protein 2 (.1) Lus10038356 [exp] 84 / 1e-19 AT3G48890 216 / 2e-71 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10029567 [exp] 84 / 4e-18 AT5G47740 187 / 4e-57 Adenine nucleotide alpha hydrolases-like superfamily protein (.1.2) Lus10027449 [exp] 74 / 1e-15 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10005746 [exp] 74 / 2e-15 AT3G48890 270 / 3e-92 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10014988 [exp] 70 / 3e-14 AT3G48890 260 / 2e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10038868 [exp] 70 / 4e-14 AT3G48890 265 / 2e-90 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Lus10034799 [exp] 47 / 5e-07 AT2G24940 87 / 3e-24 membrane-associated progesterone binding protein 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G022700 [exp] 363 / 7e-128 AT4G14965 345 / 3e-121 membrane-associated progesterone binding protein 4 (.1) Potri.006G023801 [exp] 119 / 1e-34 AT4G14965 119 / 4e-35 membrane-associated progesterone binding protein 4 (.1) Potri.018G016900 [exp] 81 / 3e-19 AT2G24940 171 / 6e-57 membrane-associated progesterone binding protein 2 (.1) Potri.015G125100 [exp] 80 / 7e-18 AT3G48890 201 / 1e-65 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.006G266200 [exp] 74 / 7e-17 AT2G24940 160 / 1e-52 membrane-associated progesterone binding protein 2 (.1) Potri.012G137800 [exp] 76 / 3e-16 AT3G48890 259 / 3e-88 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1) Potri.015G139800 [exp] 74 / 1e-15 AT3G48890 277 / 3e-95 MEMBRANE STEROID BINDING PROTEIN 2, ARABIDOPSIS THALIANA MEMBRANE-ASSOCIATED PROGESTERONE BINDING PROTEIN 3, membrane-associated progesterone binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00173 [flax] [poplar] Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain
Representative CDS sequence Show only first row Show all	>Lus10018026 pacid=23147886 polypeptide=Lus10018026 locus=Lus10018026.g ID=Lus10018026.BGIv1.0 annot-version=v1.0 ATGAAGGATGGCTGTCTGGTTAATGTGTTAATGGTGGGAGAGACTGAAGACGGGAGGAAAATGTGGAAGGTAGCGAGGGGAGCATTGGGATCCCCGTTCG TTGGGATACCTGTTCTCGTTACCTTAACTGCTGCTTTCTTCTTCAAGTTCAATTCTTTTCATCTGCCTGAGCAACCCCAGAGACTCTTCACTACGCAGGA GCTTGCTCTGTGTAACGGCACTGATGATTCACTGCCTATACTGCTCGGTATCCTCGGATCGGTCTTCGATGTAACCAAAGGTAAATCTCATTATGGAGTT GGAGGGAGCTACAATCATTTTGCTGGAAGAGATGCTTCCCGCGCATTTGTTTCAGGGAACTTTACAGGAGATGGGTTGACAGACTCATTGCGTGGCTTGT CCACGACTGAGGTCAAGGGTATCGTTGAATGGCGGGACTTCTATATTCGAACATACATATTCGTAGGGAAGCTAGTTGGTCGTTACTACGACGAGCATGG AAATCCAACAAAAACACTGAAAGGTGTTGAAGCAAAGGCTGCAAGAGGAAAGCAGCTTGCAGAGAAGCAGAAAAAAGAAGAAGCAAAACAGGCGAGTTGC AACTCAAGATGGAGTCAAGATGAGGGTGGGGAGGTGTGGTGTGATGTTGGGTATCCAAGATTAGTACAGCGACCCTTGGAGATTGCTTTGACTGGGAAGA TGAGCAAGCGATGCGCATGCTTTAAAGAAGACGAATTGGAACTGACTGGTCTTGAAGTTTATCAAGGCTGTGATCATCTCGCGCAAAGATGCCAAGTCTA A
AA sequence Show only first row Show all	>Lus10018026 pacid=23147886 polypeptide=Lus10018026 locus=Lus10018026.g ID=Lus10018026.BGIv1.0 annot-version=v1.0 MKDGCLVNVLMVGETEDGRKMWKVARGALGSPFVGIPVLVTLTAAFFFKFNSFHLPEQPQRLFTTQELALCNGTDDSLPILLGILGSVFDVTKGKSHYGV GGSYNHFAGRDASRAFVSGNFTGDGLTDSLRGLSTTEVKGIVEWRDFYIRTYIFVGKLVGRYYDEHGNPTKTLKGVEAKAARGKQLAEKQKKEEAKQASC NSRWSQDEGGEVWCDVGYPRLVQRPLEIALTGKMSKRCACFKEDELELTGLEVYQGCDHLAQRCQV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10018026 [exp]	0	1
AT4G14965		ATMAPR4	membrane-associated progestero...		Lus10042022 [exp]	1.0	0.9091
AT5G06210			RNA binding (RRM/RBD/RNP motif...		Lus10013306 [exp]	2.0	0.8909
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Lus10005751 [exp]	2.4	0.8561
AT5G55140			ribosomal protein L30 family p...		Lus10031912 [exp]	2.4	0.8757
AT5G64680			unknown protein		Lus10011265 [exp]	5.3	0.8678
AT4G19150			Ankyrin repeat family protein ...		Lus10001048 [exp]	6.9	0.8504
AT5G47890			NADH-ubiquinone oxidoreductase...		Lus10030922 [exp]	9.7	0.8661
AT4G31720		STG1, TAFII15, ...	TBP-ASSOCIATED FACTOR 10, SALT...		Lus10005077 [exp]	9.9	0.8538
AT1G65650		UCH2	Peptidase C12, ubiquitin carbo...		Lus10042047 [exp]	10.8	0.8324
AT3G07020		UGT80A2, SGT	UDP-glucosyl transferase 80A2,...		Lus10022815 [exp]	13.3	0.8235

Compare expression of checked genes

Lus10018026 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.