Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G60160 1665 / 0 ATMRP9, ABCC9 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) AT3G60970 1408 / 0 ATMRP15, ABCC15 ATP-binding cassette C15, multidrug resistance-associated protein 15 (.1) AT1G04120 1276 / 0 ATABCC5, ABCC5, ATMRP5 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) AT3G13080 1253 / 0 EST2, ATMRP3, ABCC3 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) AT3G13090 1198 / 0 ATMRP8, ATABCC6 ATP-binding cassette C6, multidrug resistance-associated protein 8 (.1) AT3G13100 1180 / 0 ATMRP7, ABCC7 ATP-binding cassette C7, multidrug resistance-associated protein 7 (.1) AT3G59140 965 / 0 ATMRP14, ABCC10 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) AT2G47800 944 / 0 EST3, ATMRP4, ABCC4 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1) AT3G62700 940 / 0 ATMRP10, ABCC14 ATP-binding cassette C14, multidrug resistance-associated protein 10 (.1) AT3G21250 924 / 0 ATMRP6, ABCC8 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042023 [exp] 2485 / 0 AT3G60160 1869 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Lus10022858 [exp] 1258 / 0 AT1G04120 2341 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10024965 [exp] 1134 / 0 AT1G04120 2176 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Lus10013201 [exp] 1068 / 0 AT3G13080 1498 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10027567 [exp] 959 / 0 AT3G59140 2001 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10039320 [exp] 954 / 0 AT3G59140 1991 / 0.0 ATP-binding cassette C10, multidrug resistance-associated protein 14 (.1) Lus10004896 [exp] 944 / 0 AT3G21250 1727 / 0.0 ARABIDOPSIS THALIANA MULTIDRUG RESISTANCE-ASSOCIATED PROTEIN 6, ATP-binding cassette C8, multidrug resistance-associated protein 6 (.1.2) Lus10030716 [exp] 932 / 0 AT3G13080 1256 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Lus10011498 [exp] 915 / 0 AT2G47800 1796 / 0.0 ATP-binding cassette C4, multidrug resistance-associated protein 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G180100 [exp] 1847 / 0 AT3G60160 1930 / 0.0 ATP-binding cassette C9, multidrug resistance-associated protein 9 (.1) Potri.001G362300 [exp] 1315 / 0 AT3G13080 2008 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.001G362200 [exp] 1266 / 0 AT3G13080 1952 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.002G255800 [exp] 1256 / 0 AT1G04120 2361 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.014G193400 [exp] 1238 / 0 AT1G04120 2323 / 0.0 MULTIDRUG RESISTANCE PROTEIN 5, Arabidopsis thaliana ATP-binding cassette C5, ATP-binding cassette C5, multidrug resistance-associated protein 5 (.1.2) Potri.003G197101 [exp] 1235 / 0 AT3G13080 1862 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G198401 [exp] 1232 / 0 AT3G13080 1827 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T125806 [exp] 1230 / 0 AT3G13080 1826 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.003G197200 [exp] 1225 / 0 AT3G13080 1832 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4) Potri.T124506 [exp] 1225 / 0 AT3G13080 1847 / 0.0 MULTIDRUG RESISTANCE PROTEIN 3, ATP-binding cassette C3, multidrug resistance-associated protein 3 (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0241 [flax] [poplar] ABC_membrane PF00664 [flax] [poplar] ABC_membrane ABC transporter transmembrane region CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10018027 pacid=23147993 polypeptide=Lus10018027 locus=Lus10018027.g ID=Lus10018027.BGIv1.0 annot-version=v1.0 ATGGCCTGGCCGGAGCTCCCCTGTTTCCCTGAGCAGCTTGTCCTGTTTGTCCAGCTTGGTTTCGTCGGAGTCATAGTTTTCAGCTGCCTCACCAAAATAG TCATCAGGGGAAAGAAGCAGCAAACATGTCCCGATGACGACGATAATAATAATGATATTGATGGAGAACCGCCGCCGCCGTTGCCGCCGGCGGCGACAAC AACCAGTTGCAGCACGTGTTGCAAAGCAAGCGTGGCATGTTCCATTCTGCTGACGACAATTCACTGCCTCATCCTATTGACGACTCTGTTCCTCCCTTCT TCTATCCCCCGCCGCCGTAGCCGCTGCAATTCCAGAGCTCTATCCCTCTCATCGGAGGCCAGCCAGCTGGCGTTATGGTTAGCCAGCCTAATAGCAATCT ACCACATCATCAAGTCCAGAAAGCACGTGACTTTCCCTTGGATCGTAAGGTCATGGTGGATTTCCGGATTCCTCCTGTCGGCAATCCCCGTTTCCATCAG AGCATATCTCAGATTTGTTGACACCGACGAAGACATCATCAATCTCGAATGGAATGACTACTCCGATCTCCTCGTCTTCCTCTCCTCCGCCTTCCTCTTC TGCATTTCAGTCAACGGCAAGACTGGCACCAGTACCACTACCAGTACTGATTCATTACAGGAACCCCTCATTGCCAAAACAGCGACGTTACAAAAACGAT CGCTGTATGGAAATGCAAGCATCCTACAGCTGGTCACCTTCTCTTGGATGAACCCGCTCTTCAGCGACGGATTCAAGAAGGCTCTCGATCAGGACGACAT TCCTGATGTCGATGTCGGTGACTCTGCCTCGTTCCTATCCTCTGTTTTCACCAATTGCCTCCACAATGCAGCAACAGCTTCGTCCACGAGTCCTTCATTT TACCACGCAATCTTTCTGCTGGTGAGAAAGAAAGCAGCGCTGAACGGTCTGTTCGCAGTGATCAGCGCCGGCGCGTCCTACGTGGGGCCCTACCTGATCA ATGGCTTTGTTGACTTTTTAAGTAGAAGGAAAGAGTACAGCTTACGAACCGGCTACCTGATTGCATTAGCATTCCTAGTAGCCAAAACGGTGGAGACCGT AACGCAGAGACAGTGGATATTCGGTGCTCGCCAGTTGGGACTCCGTCTCCGGTCAGCTTTGAACTCCCAAATCTACTCCAAGGGTCTCGTTCTCTCAGCT CGGTCACGTCAGGGTCATACAAGCGGCGAGATTATAAACTACATGAGCGTTGATGTCAATAGGGTTACGGATTTCATATGGTACCTCAACACTATCTGGA TGTTACCGATTCAAATCTCGCTAGCGATTCTCATCTTGAACACGAATCTAGGTGCATCAGGATCGGTGGCTGCTCTGGCTGCAACTATGATCGTTATGTC GTGCAACATTCCTGTTACTCGTATCCAGAAATGGTACCAGGGTAAGATTATGGAGGCGAAGGACGGAAGGATGAAGGCTACTTCGGAAGTTCTACGTAAC ATGAAGACCATAAAGCTTCAAGCTTGGGACTCGCAGTTTCTTTCGAAGCTGGAGGGGTTAAGAGAGGTTGAGCGTAGCTGGCTGTGGAAAAGTCTGAGGC TTTCCGCTACTACGGCGTTCATCTTTTGGGGGTCTCCTGCTTTCATCTCGACCGTTACTTTCGGTGCCTGTTATGTGATGGGGGTGCAGCTTACGGCTGG GAGAGTTCTATCTGCGTTGGCTACTTTTCGGATGTTGCAGGACCCGATATTCAACTTGCCTGATCTTTTGTCCACGATAGCGCAGGCAAAAGTTTCGGCC GACAGGATCACTTCCTACATGCAGGAGGAAGAGATTCAGGAGGATGCTGTTACTCTCATTCCTCCAGAGGAGGAATCAGAGTGTGGTGTTGAAATTAAAG GAGGGATTTTTACGTGGACTCCCGAATCGAAAAATAACATCACGCTAAGCGGGATCGATCTCAATGTGAAGAGAGGAATGAGAGTGGCGGTTTGCGGGAC GGTGGGGTCTGGGAAATCGAGCCTGCTCTCTTGCATCCTGGGAGAGATACACAAGCTGTCAGGAAATGTCAGGATTCGAGGCACCAAGGCGTACGTAGCT CAGTGTCCGTGGATACTGACGGGGAGCATTCGAGACAACATTTTGTTCGGGAAGGCTTATGATAGCGAGAAGTATCGGAGGACCGTGGAGGCTTGCGCTC TGGTGAAAGATTTCGAGCTTTTCTCTTGCGGTGACATGACGGAGATTGGGGAGAGAGGGATCAATATGAGCGGAGGGCAAAAGCAGAGGATACAGATTGC TCGTGCGGTTTATCAAGATGCTGACGTTTACTTGCTGGACGACCCTTTCAGCGCTGTGGATGCTCACACCGGATCTCACCTCTTTCAGGAGTGCCTAATG GGAATATTGAAAAGCAAAACAATACTTTATGTTACCCACCAGGTTGAATTTCTTCCTGCAGCAGATCTCATTGTGGTAATGCAAAATGGAAAGATAGTGC AAACCGGGAAGTTCGACCAACTTGTGGAGCAGAATGATGTAGGATTCGAAGCATTAGTTGGTGCCCACAGCCATGCTCTAGAGTCAGTTCTTGCAGTCGA GAATTCGACAACGAGGATTCAACCTGTGGAGGAGGAAGAAGAAGAAGAGGAAAAGAAAGAAAATGCCCAACCAGAAGAATCAGATAATGCAGTAGGCCAT CAGCAGGATCAGAGTGGGAAACTTGTGCAGGACGAGGAAAGAGAAAAAGGAAGCATTGGGAAACAAGTGTATTGGGCATATTTGACTTGTGTCAAAGGTG GAGTCTTGGTTCCGATCATCATCTTGGCGCAATCGTCGTTTCAGGTGTTGCAGATTGCTAGTAACTACTGGATGGCTTGGGCTACTCCTCCCACAACCGA CACCAGTAGTGTTCCAGTGGGGATGGGAACCGTTTTACTTGTTTATATGCTGTTGGCTGCTTCGAGTTCCCTCTGCGTGCTTCTCAGGGCGATGTTGGTT GCAACGGTTGGCCTCTCAACAGCTGAGAAACTCTTCAGCAGTATGCTTCACAGTATCATTCGTGCTCCGATGCATTTCTTTGACTCAACTCCCACCGGCA GAATTATGAACCGGGCGTCAACAGACCAAAGTGTGCTGGACTTGGAAATGGGACAGAGATTAGGTTGGTGCGCTTTCTCGATCATACAAATATTGGGGAC GATTGCTGTTATGTCTCAGGTTGCTTGGGAAGTATTTGTAATCTTCATCCCAGTCACTGCAGTCTGTATATGGTACCAACAATACTACACACCAACAGCC AGGGAATTGGCTCGGTTATCAGGAATACAATTAGCACCAATACTTCACCATTTCTCCGAGTCACTAGCCGGTGCAGCCACGATCCGCGCCTTTGGTGAAG GGGAAAGGTTCATTGCTTCCAATCTTGGTCTTATAGACAACTACTCGAGGCCGTGGTTCCACAATGTATCGGCTATGGAATGGTTGTCTTTCAGACTGAA TTTGCTCTCCAATTTCGTATTTGCTTTCTCTTTGGTTTTGCTCGTCTCGCTACCGGAAGGGATCATCAGCCCAAGCATTGCAGGACTAGCTGTGACATAC GGCATAAATCTGAATGTTCTCCAGGCTTCGGTTATATGGAACATATGCAATGCTGAGAACAAGATGATCTCTGTAGAAAGAGTGTTACAGTACACAAAAA TAAAAGGCGAAGCCCCCCTTGTGATTGAAGAGTGCAGACCGCCGGCTAATTGGCCTGAAACAGGAACAATTTGTTTCAAAGACTTGCAGATTCGATATGC GGAGCATTTACCATCGGTGTTGAAGAACGTAAGCTGCACATTTCCAGGGAGAAGGAAAGTAGGGGTGGTTGGGAGGACAGGGAGCGGGAAGTCGACTTTA ACACAGGCATTGTTTAGAATGGTACAAGTGCGAGAAGGAAGCATAATCATCGACGGGGTTGACATTTCAAAGATCGGACTCCATGACTTGAGATCCAGGC TGAGCATCATCCCCCAGGATCCAACCATGTTTGAAGGCACAGTAAGAGGGAATCTTGACCCATTAGGCCACTATTCAGACTTCCAAGTTTGGGAGGCATT GGAGAAATGCCAGCTTGGAAGCTTGGTGAGGGAGAAAGATGGGAAGCTGGATGCCACTGTGACGGAGAATGGAGAGAATTGGAGTGCAGGGCAAAGGCAA TTGTTCTGCCTGGGAAGAGCTCTGTTGAAGAAGAGCAGTATTCTTGTGCTGGACGAAGCAACAGCTTCCGTGGATTCAGCAACGGACAGTGTCTTGCAGA AGATCATCAGCCAAGAGTTTCAGGATCGGACGGTTGTGACGATAGCTCACAGGATCCATACGGTTATTGATAGCGATCTCGTGTTGGTGCTTAGTGATGG AAGGATTGCTGAGTATGATAGCCCGAAAATGTTGCTGCAGAGAAAGGATTCCTTCTTCTCCAAACTGATAAAAGAATATTCTGCAAGATCGTCGAACCTG AATTCTTCTGCTAGCTAG
AA sequence Show only first row Show all	>Lus10018027 pacid=23147993 polypeptide=Lus10018027 locus=Lus10018027.g ID=Lus10018027.BGIv1.0 annot-version=v1.0 MAWPELPCFPEQLVLFVQLGFVGVIVFSCLTKIVIRGKKQQTCPDDDDNNNDIDGEPPPPLPPAATTTSCSTCCKASVACSILLTTIHCLILLTTLFLPS SIPRRRSRCNSRALSLSSEASQLALWLASLIAIYHIIKSRKHVTFPWIVRSWWISGFLLSAIPVSIRAYLRFVDTDEDIINLEWNDYSDLLVFLSSAFLF CISVNGKTGTSTTTSTDSLQEPLIAKTATLQKRSLYGNASILQLVTFSWMNPLFSDGFKKALDQDDIPDVDVGDSASFLSSVFTNCLHNAATASSTSPSF YHAIFLLVRKKAALNGLFAVISAGASYVGPYLINGFVDFLSRRKEYSLRTGYLIALAFLVAKTVETVTQRQWIFGARQLGLRLRSALNSQIYSKGLVLSA RSRQGHTSGEIINYMSVDVNRVTDFIWYLNTIWMLPIQISLAILILNTNLGASGSVAALAATMIVMSCNIPVTRIQKWYQGKIMEAKDGRMKATSEVLRN MKTIKLQAWDSQFLSKLEGLREVERSWLWKSLRLSATTAFIFWGSPAFISTVTFGACYVMGVQLTAGRVLSALATFRMLQDPIFNLPDLLSTIAQAKVSA DRITSYMQEEEIQEDAVTLIPPEEESECGVEIKGGIFTWTPESKNNITLSGIDLNVKRGMRVAVCGTVGSGKSSLLSCILGEIHKLSGNVRIRGTKAYVA QCPWILTGSIRDNILFGKAYDSEKYRRTVEACALVKDFELFSCGDMTEIGERGINMSGGQKQRIQIARAVYQDADVYLLDDPFSAVDAHTGSHLFQECLM GILKSKTILYVTHQVEFLPAADLIVVMQNGKIVQTGKFDQLVEQNDVGFEALVGAHSHALESVLAVENSTTRIQPVEEEEEEEEKKENAQPEESDNAVGH QQDQSGKLVQDEEREKGSIGKQVYWAYLTCVKGGVLVPIIILAQSSFQVLQIASNYWMAWATPPTTDTSSVPVGMGTVLLVYMLLAASSSLCVLLRAMLV ATVGLSTAEKLFSSMLHSIIRAPMHFFDSTPTGRIMNRASTDQSVLDLEMGQRLGWCAFSIIQILGTIAVMSQVAWEVFVIFIPVTAVCIWYQQYYTPTA RELARLSGIQLAPILHHFSESLAGAATIRAFGEGERFIASNLGLIDNYSRPWFHNVSAMEWLSFRLNLLSNFVFAFSLVLLVSLPEGIISPSIAGLAVTY GINLNVLQASVIWNICNAENKMISVERVLQYTKIKGEAPLVIEECRPPANWPETGTICFKDLQIRYAEHLPSVLKNVSCTFPGRRKVGVVGRTGSGKSTL TQALFRMVQVREGSIIIDGVDISKIGLHDLRSRLSIIPQDPTMFEGTVRGNLDPLGHYSDFQVWEALEKCQLGSLVREKDGKLDATVTENGENWSAGQRQ LFCLGRALLKKSSILVLDEATASVDSATDSVLQKIISQEFQDRTVVTIAHRIHTVIDSDLVLVLSDGRIAEYDSPKMLLQRKDSFFSKLIKEYSARSSNL NSSAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10018027 [exp]	0	1
AT3G04880		DRT102	DNA-DAMAGE-REPAIR/TOLERATION 2...		Lus10015936 [exp]	1.0	0.8680
AT1G47670			Transmembrane amino acid trans...		Lus10015997 [exp]	6.3	0.8585
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10036674 [exp]	7.5	0.8676
AT1G27040			Major facilitator superfamily ...		Lus10002793 [exp]	7.5	0.8593
AT3G60160		ATMRP9, ABCC9	ATP-binding cassette C9, multi...		Lus10042023 [exp]	8.4	0.8310
AT1G50660			unknown protein		Lus10002069 [exp]	8.7	0.8060
AT4G29680			Alkaline-phosphatase-like fami...		Lus10017872 [exp]	9.5	0.8351
					Lus10040690 [exp]	13.0	0.8458
AT2G33810	SBP	SPL3	squamosa promoter binding prot...		Lus10015421 [exp]	13.4	0.8512
AT1G15760			Sterile alpha motif (SAM) doma...		Lus10041687 [exp]	13.6	0.8080

Compare expression of checked genes

Lus10018027 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.