Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03960 77 / 2e-15 IQD12 IQ-domain 12 (.1) AT5G13460 67 / 5e-12 IQD11 IQ-domain 11 (.1) AT4G10640 64 / 4e-11 IQD16 IQ-domain 16 (.1) AT4G14750 64 / 4e-11 IQD19 IQ-domain 19 (.1) AT1G01110 64 / 7e-11 IQD18 IQ-domain 18 (.1.2) AT4G00820 63 / 1e-10 IQD17 IQ-domain 17 (.1) AT3G16490 62 / 1e-10 IQD26 IQ-domain 26 (.1) AT3G49380 62 / 1e-10 IQD15 IQ-domain 15 (.1) AT5G07240 62 / 2e-10 IQD24 IQ-domain 24 (.1) AT2G26180 62 / 2e-10 IQD6 IQ-domain 6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042025 [exp] 419 / 2e-146 AT5G03960 80 / 2e-16 IQ-domain 12 (.1) Lus10042027 [exp] 276 / 6e-89 AT5G03960 169 / 5e-48 IQ-domain 12 (.1) Lus10018031 [exp] 212 / 2e-65 AT5G03960 119 / 3e-30 IQ-domain 12 (.1) Lus10021904 [exp] 71 / 5e-13 AT4G14750 314 / 2e-103 IQ-domain 19 (.1) Lus10006613 [exp] 66 / 2e-11 AT4G14750 295 / 6e-96 IQ-domain 19 (.1) Lus10012608 [exp] 66 / 3e-11 AT1G01110 432 / 8e-147 IQ-domain 18 (.1.2) Lus10041188 [exp] 65 / 3e-11 AT4G14750 288 / 2e-93 IQ-domain 19 (.1) Lus10010104 [exp] 65 / 3e-11 AT1G01110 434 / 3e-147 IQ-domain 18 (.1.2) Lus10023233 [exp] 64 / 5e-11 AT4G00820 126 / 1e-33 IQ-domain 17 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046000 [exp] 81 / 2e-16 AT5G03960 197 / 1e-58 IQ-domain 12 (.1) Potri.016G042700 [exp] 79 / 5e-16 AT5G03960 180 / 2e-52 IQ-domain 12 (.1) Potri.001G021000 [exp] 72 / 1e-13 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.010G082600 [exp] 66 / 2e-11 AT4G14750 261 / 2e-83 IQ-domain 19 (.1) Potri.012G016200 [exp] 66 / 2e-11 AT3G49260 215 / 2e-64 IQ-domain 21 (.1.2.3) Potri.011G153400 [exp] 66 / 2e-11 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.001G448100 [exp] 65 / 3e-11 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.015G012500 [exp] 65 / 3e-11 AT3G49260 213 / 9e-64 IQ-domain 21 (.1.2.3) Potri.001G190500 [exp] 65 / 3e-11 AT3G16490 293 / 5e-96 IQ-domain 26 (.1) Potri.002G178500 [exp] 65 / 4e-11 AT4G00820 458 / 1e-156 IQ-domain 17 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00612 [flax] [poplar] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Lus10018029 pacid=23148001 polypeptide=Lus10018029 locus=Lus10018029.g ID=Lus10018029.BGIv1.0 annot-version=v1.0 ATGAACTACAACCAGTCAATGAAATTGAAGAGCGGGAAATCTCAATGGATTTCTGGAAGGCTGAGACTTCGACAACAAAACCACGAAGCTGTTCTGCCCC CAACAACGACGAAAACAGACAGAAAACTCACACAAGCAAGAGAGCGGCAAAAGAAGTACGCTCTCACTGTCGCCACGGCAACCGCCGCCGCCGCCGAGGC TGCCGTCTTAGCTGCCAAAGCCGCTGCTGAGCTTGTCCACATCACCGCTACCCAGGGTCATCATTTACCTAAACCGGATCGTAATTGGATCGCCGCTGCC ATTTTGATCCAGAGTGTTTTTCGTGGTCACCTTGCCAGGAAAGCCTTACGAGCACTGAAGGGTGTGGTGAAGCTTCAAGCTATTGTTCGCGGCCAGTCCG TCCGACGCCAATTTGCCACCGTCAAACTCGAGCATTTGACAATGCTGAAAGCCAAACACAAGAATGTCGAATCGATCAATTCGCTTACAAGCAGTAGCAG CAGCAGCAGCGGTCGAAGAAGTTGGGATTTGAGTAGACGGTCCAAGGAAGATATAGAAATCATATTGTCAAGGAAGCAAGATTGTAACATAAAAAGAGAC AGGATGATAAGATATTACTCCTTCTCCCACCCGGAAAGGAGGAACACAAGAACACTGCAGGAAGAACTAGTGCTAGAGAATGAGGGAAGTGGTAAGAATG GTCGCAGTTCGATAGACAACTCGAGGCTAGTTCCTATGTCCACCATATCATTCAATGGTGAACTAACAGGGAATCAAACAAGGAAACTCCCTGGCAATTG TGGTACCACTGTTCATCATGATGGGGACGATTGCAGTTTGCCTTCGATTTCATATGCACGAAGGTCATTGGGAGGTAATGCCAGCGATAATTCAGTCCCA TTTAGTAGCTCACAGGCTTTGCCAACTTATATGGCCGCGACACAGTCATCGAGAGCAAGAACAAGATCGACGAGCACACCGCGACATAGCCTAGACGAGA TCGAGAGGAAAGGTGGAATAATGCAGCAGTCCCTTTGGTCTTCTGATCATCATGGAGAACTAGAAGTGTTTAGTTGTAACGCTGCTGCTGGAAAATCGTC ATGTGGTCAGGAAATGTCATTCCTGAACAGAAAGGTTCATCACCGTAGATTCAGCCATGGATTCTGA
AA sequence Show only first row Show all	>Lus10018029 pacid=23148001 polypeptide=Lus10018029 locus=Lus10018029.g ID=Lus10018029.BGIv1.0 annot-version=v1.0 MNYNQSMKLKSGKSQWISGRLRLRQQNHEAVLPPTTTKTDRKLTQARERQKKYALTVATATAAAAEAAVLAAKAAAELVHITATQGHHLPKPDRNWIAAA ILIQSVFRGHLARKALRALKGVVKLQAIVRGQSVRRQFATVKLEHLTMLKAKHKNVESINSLTSSSSSSSGRRSWDLSRRSKEDIEIILSRKQDCNIKRD RMIRYYSFSHPERRNTRTLQEELVLENEGSGKNGRSSIDNSRLVPMSTISFNGELTGNQTRKLPGNCGTTVHHDGDDCSLPSISYARRSLGGNASDNSVP FSSSQALPTYMAATQSSRARTRSTSTPRHSLDEIERKGGIMQQSLWSSDHHGELEVFSCNAAAGKSSCGQEMSFLNRKVHHRRFSHGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10018029 [exp]	0	1
AT1G73760			RING/U-box superfamily protein...		Lus10013497 [exp]	6.2	0.6931
AT1G06320			unknown protein		Lus10038213 [exp]	21.2	0.6168
AT4G33550			Bifunctional inhibitor/lipid-t...		Lus10005011 [exp]	45.1	0.6101
AT5G23850			Arabidopsis thaliana protein o...		Lus10037863 [exp]	47.6	0.6033
AT5G40960			Protein of unknown function (D...		Lus10012541 [exp]	56.4	0.5656
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10019169 [exp]	58.0	0.5808
AT5G44510		TAO1	target of AVRB operation1 (.1)		Lus10017418 [exp]	62.6	0.6002
AT3G61040		CYP76C7	"cytochrome P450, family 76, s...		Lus10027425 [exp]	70.6	0.5656
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Lus10022663 [exp]	113.6	0.5696
AT2G45040			Matrixin family protein (.1)		Lus10007791 [exp]	113.8	0.5680

Compare expression of checked genes

Lus10018029 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.