Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10150 492 / 4e-175 ATPAP16, PAP16 purple acid phosphatase 16 (.1) AT5G57140 113 / 8e-28 ATPAP28, PAP28 purple acid phosphatase 28 (.1) AT5G63140 107 / 1e-25 ATPAP29, PAP29 purple acid phosphatase 29 (.1) AT2G46880 81 / 7e-17 ATPAP14, PAP14 purple acid phosphatase 14 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031039 [exp] 459 / 1e-161 AT3G10150 448 / 7e-158 purple acid phosphatase 16 (.1) Lus10042026 [exp] 244 / 1e-79 AT3G10150 150 / 1e-43 purple acid phosphatase 16 (.1) Lus10027596 [exp] 98 / 2e-22 AT5G57140 540 / 0.0 purple acid phosphatase 28 (.1) Lus10022947 [exp] 97 / 5e-22 AT5G57140 538 / 0.0 purple acid phosphatase 28 (.1) Lus10009863 [exp] 91 / 3e-20 AT5G63140 503 / 2e-179 purple acid phosphatase 29 (.1) Lus10010289 [exp] 89 / 3e-19 AT5G63140 491 / 2e-174 purple acid phosphatase 29 (.1) Lus10005170 [exp] 64 / 2e-12 AT3G10150 59 / 3e-11 purple acid phosphatase 16 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G042500 [exp] 568 / 0 AT3G10150 521 / 0.0 purple acid phosphatase 16 (.1) Potri.006G074300 [exp] 111 / 5e-27 AT5G57140 514 / 0.0 purple acid phosphatase 28 (.1) Potri.014G109100 [exp] 105 / 3e-25 AT5G63140 520 / 0.0 purple acid phosphatase 29 (.1) Potri.002G183000 [exp] 103 / 3e-24 AT5G63140 521 / 0.0 purple acid phosphatase 29 (.1) Potri.002G183200 [exp] 101 / 1e-23 AT5G63140 515 / 0.0 purple acid phosphatase 29 (.1) Potri.006G074500 [exp] 99 / 1e-22 AT5G57140 485 / 2e-171 purple acid phosphatase 28 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Lus10018030 pacid=23148009 polypeptide=Lus10018030 locus=Lus10018030.g ID=Lus10018030.BGIv1.0 annot-version=v1.0 ATGGGACTACGCCCGTTTCATCTGCCCATCTCGCTCGCTTGCGTCCTCCTCCTCTGCGTCGCCAGCAGTAGCACAGACTCACCGGTCATCGAGCTCAAAC TGAAGGCGCAGCAGCGGCATCAACTTCAGATGCGGCGTGGGCCGCCTTTCAAGATTGCGATTTTCGCAGACTTGCATTTTGGGGAAGATGCCTGGACTGA TTGGGGGCCCGTCCAAGACGCCAACTCTATCAGAGTCATGTCCAACGTACTGGACACTGAAAACCCAGATTTTGTAGTTTATCTTGGAGATGTCATTACA GCCAACAATATCCCAGTTGCTAATGCCAGCTTGTATTGGAGCCTGGCAACATCTCCAACCAGGGACAGGGGCATACCATGGGCTAGTGTATTTGGAAACC ATGACGATATGCCATTTGAGTGGCCGATGGAGTGGTTCTCAGATCCTGGAATTCCTCAGGTTCACTGCCCTGAACCCAACTCATCATGTTCTGGAGAAGA GTACTGTGGCTTCAAAGGCACGCAACGTGTGATGCTGATGAAAAAGGAGGTTGAGCAGAATGCGTTATCATACTCCAGAACTGGTCCTAAACATCTATGG CCAAGCATATCCAACTATGTTCTTCAACTGTCCTCTCCGGGAGATCCAAAATCGCCAGTTATGTTCATGTACTTCCTGGATTCTGGTGGAGGATCATATC CAGAGGTTATATCAGAAGCGCAAGCAAAATGGTTCAGGCAAAAATCTCAAGAGATTAACCCTGCTTCAAAGGTTCCTGAGGTTATATTCTGGCATATTCC AAGTAAAGCTTACAAAAAGGTGGCCCCTTGGTTCGGAGTACACAAGCCTTGTGTTGGTTCTATAAACAAGGAGAGTGTAGCTGCTCAAGAAGCTGAATTT GGCATCATGGACATCTTAACTCAACGACCTTCTGTCAAGGCAATATTTGTAGGGCACAACCACGGACTGGATTGGTGCTGCCCTCACGAGGGGAAAGTAA AACTATGGATGTGCTATGCTAGGCATACCGGCTATGGTGGATACGGGAACTGGGATAGAGGATCCAGAATACTGGAGGTTACAGAGGACCCTTTCTCTCT CAAGTCATGGATAAGAATGGAGGATGGGGAAGTGCACAGTGAAGTTGTGCTGAGTTCTTGA
AA sequence Show only first row Show all	>Lus10018030 pacid=23148009 polypeptide=Lus10018030 locus=Lus10018030.g ID=Lus10018030.BGIv1.0 annot-version=v1.0 MGLRPFHLPISLACVLLLCVASSSTDSPVIELKLKAQQRHQLQMRRGPPFKIAIFADLHFGEDAWTDWGPVQDANSIRVMSNVLDTENPDFVVYLGDVIT ANNIPVANASLYWSLATSPTRDRGIPWASVFGNHDDMPFEWPMEWFSDPGIPQVHCPEPNSSCSGEEYCGFKGTQRVMLMKKEVEQNALSYSRTGPKHLW PSISNYVLQLSSPGDPKSPVMFMYFLDSGGGSYPEVISEAQAKWFRQKSQEINPASKVPEVIFWHIPSKAYKKVAPWFGVHKPCVGSINKESVAAQEAEF GIMDILTQRPSVKAIFVGHNHGLDWCCPHEGKVKLWMCYARHTGYGGYGNWDRGSRILEVTEDPFSLKSWIRMEDGEVHSEVVLSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10150		ATPAP16, PAP16	purple acid phosphatase 16 (.1...		Lus10018030 [exp]	0	1
AT3G10915			Reticulon family protein (.1.2...		Lus10034224 [exp]	5.0	0.9377
AT4G33910			2-oxoglutarate (2OG) and Fe(II...		Lus10011084 [exp]	5.5	0.9080
AT1G31120		KUP10	K+ uptake permease 10, K+ upta...		Lus10038362 [exp]	5.7	0.9176
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	8.0	0.9257
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10013287 [exp]	8.1	0.9270
AT1G10430		PP2A-2	protein phosphatase 2A-2 (.1)		Lus10030810 [exp]	9.2	0.9275
AT2G48030			DNAse I-like superfamily prote...		Lus10042675 [exp]	9.6	0.8968
AT1G16670			Protein kinase superfamily pro...		Lus10026503 [exp]	10.0	0.9246
AT1G50740			Transmembrane proteins 14C (.1...		Lus10008541 [exp]	12.4	0.9133
AT3G07370		ATCHIP, CHIP	carboxyl terminus of HSC70-int...		Lus10025884 [exp]	15.8	0.9121

Compare expression of checked genes

Lus10018030 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.