Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03960 91 / 2e-20 IQD12 IQ-domain 12 (.1) AT1G76705 58 / 3e-10 calmodulin binding (.1) AT5G13460 54 / 7e-08 IQD11 IQ-domain 11 (.1) AT2G26180 51 / 7e-07 IQD6 IQ-domain 6 (.1) AT3G22190 49 / 2e-06 IQD5 IQ-domain 5 (.1.2) AT4G14750 49 / 3e-06 IQD19 IQ-domain 19 (.1) AT1G72670 49 / 3e-06 IQD8 IQ-domain 8 (.1) AT1G51960 49 / 3e-06 IQD27 IQ-domain 27 (.1) AT3G59690 48 / 6e-06 IQD13 IQ-domain 13 (.1) AT1G17480 47 / 2e-05 IQD7 IQ-domain 7 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042027 [exp] 459 / 2e-161 AT5G03960 169 / 5e-48 IQ-domain 12 (.1) Lus10018029 [exp] 237 / 3e-75 AT5G03960 114 / 2e-28 IQ-domain 12 (.1) Lus10042025 [exp] 207 / 6e-64 AT5G03960 80 / 2e-16 IQ-domain 12 (.1) Lus10013522 [exp] 50 / 1e-06 AT2G26180 403 / 2e-138 IQ-domain 6 (.1) Lus10036508 [exp] 49 / 4e-06 AT5G03040 343 / 1e-113 IQ-domain 2 (.1.2.3) Lus10041419 [exp] 48 / 7e-06 AT5G03040 345 / 2e-115 IQ-domain 2 (.1.2.3) Lus10023233 [exp] 47 / 7e-06 AT4G00820 126 / 1e-33 IQ-domain 17 (.1) Lus10005315 [exp] 47 / 1e-05 AT5G13460 235 / 7e-73 IQ-domain 11 (.1) Lus10008876 [exp] 45 / 2e-05 AT1G01110 110 / 7e-29 IQ-domain 18 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G046000 [exp] 106 / 2e-25 AT5G03960 197 / 1e-58 IQ-domain 12 (.1) Potri.016G042700 [exp] 77 / 2e-15 AT5G03960 180 / 2e-52 IQ-domain 12 (.1) Potri.001G021000 [exp] 60 / 1e-09 AT5G13460 345 / 3e-115 IQ-domain 11 (.1) Potri.001G448100 [exp] 54 / 1e-07 AT4G00820 288 / 2e-90 IQ-domain 17 (.1) Potri.006G226600 [exp] 52 / 3e-07 AT2G26180 386 / 1e-131 IQ-domain 6 (.1) Potri.001G215200 [exp] 50 / 1e-06 AT3G22190 272 / 4e-87 IQ-domain 5 (.1.2) Potri.018G062001 [exp] 48 / 4e-06 AT2G26180 260 / 2e-85 IQ-domain 6 (.1) Potri.011G153400 [exp] 48 / 8e-06 AT4G00820 331 / 3e-107 IQ-domain 17 (.1) Potri.013G127200 [exp] 47 / 2e-05 AT3G59690 447 / 5e-153 IQ-domain 13 (.1) Potri.015G142200 [exp] 46 / 3e-05 AT5G07240 138 / 3e-36 IQ-domain 24 (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018031 pacid=23147989 polypeptide=Lus10018031 locus=Lus10018031.g ID=Lus10018031.BGIv1.0 annot-version=v1.0 ATGGCGAACAACAGCAATAAAGGCAGCTGCTGGTTTGGTTGGATGAAGAAAATCTTCACCTGCAAGCTTTCCGACAAGGCCAGGAAAGCGTTACGAGCAC TTAAGGGAGTGGTGAAGCTTCAAGCTATTGTCCGCGGCCAGTCCGTCAGACGCCGATTTGCCATCATCAAACTCAAGTATTTGACAATGCTGGAAACCTC TAGAGCCTGTAAAGATGATAACGTGCAGGGTAAAGGAGAGCACAGGAACCTCGAATCGATCAATTCGCTTACAAGCAGCAGCAGCAGTCATAGAAGTTGG GATTTCAGTAGACTGTCAAAGGAAGATATAGAAATCCTATGGTCAAGGAGGCAAGAGGGTAACATCAAACGAGATAGGATGATGAGATACTCCTTCTCCC ACCGGGAAAGGAGGAACACACAACTATTGGAAGACCTATTGCTGGAGAATGAGGCAAGTGGTAAGAATGGTAGCAATTGGATGGAGAATTTGAGGCTAGT TGTTCCTATGTCCACATCATTCAATGGCGAACTAACCACAGAGAGTACTGAGACCTCCTCACATCTTAAAACCAGAAATCGGACAAGGAAACTCTATCGC AGCGATTCTGTTACTGCTGCTGATCATGATGGTAACGATTGCAGTTCGCCTTCTATTTCATCTGCACGGAGGTCGTTTGGCCATACTGAGCAAAGGGCGA GCAGCTCAACGAGAGATAATAATGCAATCGACAGTTGTTCAGGACCGGTGAATAGCTCACCAGCTTTGCCAACTTACATGGCTGCGACACAGTCAACGAG AGCAAGGATAAGATCGCGGAGCACGCCGAGGCAGAGAGGTCAGGACCGGAGCGAGATACAGGGTTACAAGAGCGGAGGTGGTGGAGTGCTACAGTCCCTT TGGTCTTCTGATAATCATAATGGAGAAATGTTTAGTTGTGATGCTGGGAAATCGTCATGTGGTCAGGAAATGCCGTTCCTCAAGAGTAAGGTTCATCACC GTGGATTCAGCCTTGCTGCTTCCTCTTCCCAGCATAAGAATTGGTAA
AA sequence Show only first row Show all	>Lus10018031 pacid=23147989 polypeptide=Lus10018031 locus=Lus10018031.g ID=Lus10018031.BGIv1.0 annot-version=v1.0 MANNSNKGSCWFGWMKKIFTCKLSDKARKALRALKGVVKLQAIVRGQSVRRRFAIIKLKYLTMLETSRACKDDNVQGKGEHRNLESINSLTSSSSSHRSW DFSRLSKEDIEILWSRRQEGNIKRDRMMRYSFSHRERRNTQLLEDLLLENEASGKNGSNWMENLRLVVPMSTSFNGELTTESTETSSHLKTRNRTRKLYR SDSVTAADHDGNDCSSPSISSARRSFGHTEQRASSSTRDNNAIDSCSGPVNSSPALPTYMAATQSTRARIRSRSTPRQRGQDRSEIQGYKSGGGGVLQSL WSSDNHNGEMFSCDAGKSSCGQEMPFLKSKVHHRGFSLAASSSQHKNW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03960		IQD12	IQ-domain 12 (.1)		Lus10018031 [exp]	0	1
AT4G14550	AUX_IAA	SLR, IAA14	SOLITARY ROOT, indole-3-acetic...		Lus10018766 [exp]	1.7	0.9737
AT4G31470			CAP (Cysteine-rich secretory p...		Lus10013693 [exp]	3.5	0.9655
AT3G04730	AUX_IAA	IAA16	indoleacetic acid-induced prot...		Lus10018765 [exp]	5.7	0.9641
AT4G14090			UDP-Glycosyltransferase superf...		Lus10040591 [exp]	6.0	0.9528
AT1G64640		AtENODL8	early nodulin-like protein 8 (...		Lus10033227 [exp]	6.2	0.9656
AT4G02330		AtPME41, ATPMEP...	pectin methylesterase 41, Plan...		Lus10031470 [exp]	6.5	0.9606
					Lus10024349 [exp]	9.0	0.9597
AT3G61640		AGP20, ATAGP20	arabinogalactan protein 20 (.1...		Lus10033939 [exp]	9.5	0.9632
AT3G08030			Protein of unknown function, D...		Lus10039602 [exp]	9.5	0.9509
AT4G01330			Protein kinase superfamily pro...		Lus10041593 [exp]	10.6	0.9326

Compare expression of checked genes

Lus10018031 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.