Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57290 806 / 0 ATINT6, ATEIF3E-1, TIF3E1, INT-6, EIF3E eukaryotic translation initiation factor 3E (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042031 [exp] 905 / 0 AT3G57290 804 / 0.0 eukaryotic translation initiation factor 3E (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047600 [exp] 821 / 0 AT3G57290 800 / 0.0 eukaryotic translation initiation factor 3E (.1) Potri.016G043800 [exp] 806 / 0 AT3G57290 787 / 0.0 eukaryotic translation initiation factor 3E (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09440 [flax] [poplar] eIF3_N eIF3 subunit 6 N terminal domain CL0123 [flax] [poplar] HTH PF01399 [flax] [poplar] PCI PCI domain
Representative CDS sequence Show only first row Show all	>Lus10018035 pacid=23147981 polypeptide=Lus10018035 locus=Lus10018035.g ID=Lus10018035.BGIv1.0 annot-version=v1.0 ATGGCGAACTACGATCTGACAGCCCGAATTGGTCCTAATCTGGACAGGCACCTGGTATTCCCTCTTCTGGAATTTCTACAGGAGCGAACGCTCTACCCGG ATGAACAGATCTTGAAGTCTAAGATTGTTCTCTTGAACAAGACCAACATGGTCGATTACGCCATGGATATCCACAAGAGCCTCTACCATACAGAAGACGT TCCGCAAGAGATGACGGATATGAGAACGGAGGTCGTGGCCAAACTTAAGGCCCTAGAGGAGGCTGCGTCGCCGATTATTGCGTTTTTGCAAAATCCTAAT GCCGTGCAGGAGCTGAGAGCTGACAAGCAGTACAATCTTCAGATGCTCCATGACCGTTATCAGATTGGCCCAGACCAGATTGAAGCATTGTATCAGTATG CCAAATTCCAGTTTGAATGCGGTAACTACTCTGGGGCTGCTGACTACCTCTACCAGTATAGGGCTTTATGCACCAACAGTGAGAGCAGTCTGAGTGCTCT ATGGGGAAAGTTGGCTGCAGAGATACTTATGCAAAACTGGGATATTGCTCTTGAAGAACTTAATCGACTGAAAGAAATAATTGACTCCAAGACCTTCTCT TCACCATTGAATCAGGTGCAAAGTAGAATCTGGTTGATGCATTGGAGTCTCTTCATCTTTTTCAATCATGACAATGGCAGAACACAGATCATTGATCTCT TCAATCAGGATAAGTACCTTAATGCCATCCAAACTAGTGCTCCACATCTTCTTCGTTATCTAGCAACAGCATTTGTTGTTAACAAAAGAAGACGTCCCCA GTTTAAGGACTTCATCAGAGTTGTCCAGCAGGAGCAACATTCTTACAAGGACCCAATCACAGAGTTTTTGGCCTGTGTCTATGTCAATTATGATTTTGAT GGAGCACAAAAGAAGATGAAAGAATGTGAAGAAGTGATTATAAATGATCCTTTCCTCGGAAAACGAGTTGAAGATGGAAGCTTTTCTACTGTGCCATTAA GAGACGAATTCCTTGAAAACGCCCGTCTCTTCATATTTGAAACTTACTGTCGCATCCATCAGCGCATTGACATGGGAGTGCTGGCAGAGAAACTGAATCT GAATTATGAAGAGGCAGAGAGATGGATTGTAAACCTCATCCGCAACTCCAAACTTGATGCTAAGCTTGACACCGAGACCGGAACCGTAATCATGGAACCC AATCAGCCCAATGTGTATGAGCAGTTGATAGACCACACAACATCACTGTCACTTCGTACGTACAAGTTGGCTAGCCAGCTGATGGAGCACGGCCAAGCTC AACCCGCCAGATAA
AA sequence Show only first row Show all	>Lus10018035 pacid=23147981 polypeptide=Lus10018035 locus=Lus10018035.g ID=Lus10018035.BGIv1.0 annot-version=v1.0 MANYDLTARIGPNLDRHLVFPLLEFLQERTLYPDEQILKSKIVLLNKTNMVDYAMDIHKSLYHTEDVPQEMTDMRTEVVAKLKALEEAASPIIAFLQNPN AVQELRADKQYNLQMLHDRYQIGPDQIEALYQYAKFQFECGNYSGAADYLYQYRALCTNSESSLSALWGKLAAEILMQNWDIALEELNRLKEIIDSKTFS SPLNQVQSRIWLMHWSLFIFFNHDNGRTQIIDLFNQDKYLNAIQTSAPHLLRYLATAFVVNKRRRPQFKDFIRVVQQEQHSYKDPITEFLACVYVNYDFD GAQKKMKECEEVIINDPFLGKRVEDGSFSTVPLRDEFLENARLFIFETYCRIHQRIDMGVLAEKLNLNYEEAERWIVNLIRNSKLDAKLDTETGTVIMEP NQPNVYEQLIDHTTSLSLRTYKLASQLMEHGQAQPAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	0	1
AT3G09720			P-loop containing nucleoside t...		Lus10013644 [exp]	1.4	0.9644
AT1G80670		RAE1	RNA export factor 1, Transduci...		Lus10002323 [exp]	2.0	0.9570
AT2G40770			zinc ion binding;DNA binding;h...		Lus10012867 [exp]	2.2	0.9559
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	3.5	0.9558
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10037932 [exp]	3.9	0.9584
AT2G40510			Ribosomal protein S26e family ...		Lus10034223 [exp]	4.0	0.9611
AT4G31810			ATP-dependent caseinolytic (Cl...		Lus10010685 [exp]	5.2	0.9510
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	5.7	0.9487
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10012706 [exp]	6.2	0.9476
AT3G25430			Polynucleotidyl transferase, r...		Lus10009563 [exp]	6.3	0.9500

Compare expression of checked genes

Lus10018035 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.