Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57200 677 / 0 unknown protein AT3G08550 667 / 0 ABI8, ELD1, KOB1 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) AT2G41451 629 / 0 unknown protein AT3G61030 113 / 2e-26 Calcium-dependent lipid-binding (CaLB domain) family protein (.1) AT3G60950 112 / 6e-26 C2 calcium/lipid-binding endonuclease/exonuclease/phosphatase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042032 [exp] 911 / 0 AT3G57200 681 / 0.0 unknown protein Lus10039569 [exp] 639 / 0 AT3G08550 781 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024181 [exp] 575 / 0 AT3G08550 684 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10000243 [exp] 237 / 2e-75 AT3G08550 255 / 3e-83 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Lus10024182 [exp] 46 / 1e-05 AT3G08550 114 / 2e-30 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G041900 [exp] 729 / 0 AT3G57200 744 / 0.0 unknown protein Potri.001G022700 [exp] 666 / 0 AT3G08550 749 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.003G202900 [exp] 664 / 0 AT3G08550 699 / 0.0 KOBITO, ABA INSENSITIVE 8, elongation defective 1 protein / ELD1 protein (.1) Potri.006G045500 [exp] 647 / 0 AT3G57200 646 / 0.0 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018036 pacid=23147908 polypeptide=Lus10018036 locus=Lus10018036.g ID=Lus10018036.BGIv1.0 annot-version=v1.0 ATGGCGGGTCCAATCAGACCCACATTTCAATCCCCTTTTTCTTCATCATCATCTCATCAGACCTTCGTTTCCCGTCTCCTCTTTCTCCTCACTCTCATCC CTTTCACTCTCGCCGCTTTCGCATTCGTTCTCCAATGGCGCGGGGGTTTTCTGAACGACCCCGTCTCCAGATGGTCTCCTGAAATCAATCATCAGTTCCC AGGAATGGCTACGATCAATACTGTCTCCGACGATCGCCATACTGTGGTGGATAGAAGTTCCGGTTCCGGATGCTCTCTCCTTGGTCCCAGCCGTTCTGCT TCCTTCCCTTACTATCGGAATTGGACGTTCGACGTCGCGTCGGATCTGAATCCTAAGATCTGTATAACAACAAGTACTTCTGCTGGCTTAGAGCAGATTT TACCATGGCTTTTCTATCACAAGGTCCTTGGAGTTTCAACCTTTCTTCTTTTCGTGGAGGGAAAGGCTGCCTCACCTACCGTATCTAAAGTTCTTGAAAC TATTCAGGGTGTCAAAGTTATATACAGGACTAGAGAACTCGAGGAGCAACAAGCTAATAGCCGTGTATGGAATGAAACTTGGTTGTCGAGCTTCTTCTAC AAACCGTGCAATCATGAGTTATTTGTAAAGCAAACACTCAACATGGAAATGGCTATCGTCATGGCAAGAGATGCAGGAGTTGATTGGATATTCCACCTTG ACACAGATGAGTTGATTCATCCTGCGGGAGCTGCTGAGTATTCGTTGACACATTTGCTATCTGATTTGCCTGGAGATGTTGATATGGTTATATTCCCAAA TTACGAGAGTAGTGTTGAGAGGGATAATATCAAGGAACCTTTCAGTGAGGTCTCAATGTTCAAAAAAAATTATGATCATCTTCCTCGAGATGTCTACTTC GGAAATTATAGAACAGCTACCCGTGGTAATCCAAACTACTTTCTAACGTATGGAAATGGCAAGTCTGGTGCTCGTGTTGTAGATCATCTTCGCCCCAATG GTGCACATCGATGGCATAACTACAGGAAATCTCCAAACGAAGTCAAATTTGAAGAGGCTGCTGTTCTGCATTATACATATCCTAAATTCTCTGATCTAAC TTCAAGACGTGATCGCTGTGGATGTAAACCCACTAAAGAGGATGTCAAGAGGTGTTTCATGTTGGAATTCGACAGAGCTGCCTTCATAATTGCTTCAACT GCAACAGACGAAGAGATGCTCCGCTGGTATCGAGAACGTGTCGTATGGACAGACAAACAATTGATCATCAAACTTCAAAGAAAGGGCATCCTAACTCGCA TTTACTCCCCCATGGTCATTATTCAAGCACTGCGAGAAGCCGGAGTTTTCAGCTCAGTGATATCAGCAGCAGCAGAGACGAAGAACATCACAGTACAGGA GTTCTTATCATCAGTGAGTAACGCTACTACGAACCCATCTAGACCGAACATACCACTACGTTCTAGGAAGATCGGTTACGAGAAGATTGAAGAATCAACT CAAGCAATCGGTAGAAGGGTGCTGGAGATCAGTACTAACAACACTTCACCTTCATATCCATCAGCAGTGCCACCGCTTTCCCCTCCCGGTATGAACGACG ACATTATCGACATGGATATGACATGA
AA sequence Show only first row Show all	>Lus10018036 pacid=23147908 polypeptide=Lus10018036 locus=Lus10018036.g ID=Lus10018036.BGIv1.0 annot-version=v1.0 MAGPIRPTFQSPFSSSSSHQTFVSRLLFLLTLIPFTLAAFAFVLQWRGGFLNDPVSRWSPEINHQFPGMATINTVSDDRHTVVDRSSGSGCSLLGPSRSA SFPYYRNWTFDVASDLNPKICITTSTSAGLEQILPWLFYHKVLGVSTFLLFVEGKAASPTVSKVLETIQGVKVIYRTRELEEQQANSRVWNETWLSSFFY KPCNHELFVKQTLNMEMAIVMARDAGVDWIFHLDTDELIHPAGAAEYSLTHLLSDLPGDVDMVIFPNYESSVERDNIKEPFSEVSMFKKNYDHLPRDVYF GNYRTATRGNPNYFLTYGNGKSGARVVDHLRPNGAHRWHNYRKSPNEVKFEEAAVLHYTYPKFSDLTSRRDRCGCKPTKEDVKRCFMLEFDRAAFIIAST ATDEEMLRWYRERVVWTDKQLIIKLQRKGILTRIYSPMVIIQALREAGVFSSVISAAAETKNITVQEFLSSVSNATTNPSRPNIPLRSRKIGYEKIEEST QAIGRRVLEISTNNTSPSYPSAVPPLSPPGMNDDIIDMDMT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G57200			unknown protein		Lus10018036 [exp]	0	1
AT4G31940		CYP82C4	"cytochrome P450, family 82, s...		Lus10042922 [exp]	2.4	0.7828
AT4G02940			oxidoreductase, 2OG-Fe(II) oxy...		Lus10042669 [exp]	3.2	0.7854
AT1G67390			F-box family protein (.1)		Lus10029083 [exp]	5.5	0.7588
AT5G40960			Protein of unknown function (D...		Lus10035200 [exp]	6.0	0.7624
AT2G35610		XEG113	xyloglucanase 113 (.1)		Lus10005034 [exp]	6.4	0.7065
AT3G57200			unknown protein		Lus10042032 [exp]	12.0	0.7473
					Lus10010492 [exp]	12.1	0.7791
AT1G26610	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004659 [exp]	15.3	0.7282
AT4G08150	HD	BP1, KNAT1	BREVIPEDICELLUS 1, BREVIPEDICE...		Lus10028244 [exp]	21.2	0.7636
AT1G27200			Domain of unknown function (DU...		Lus10036676 [exp]	24.3	0.7407

Compare expression of checked genes

Lus10018036 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.