Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10140 363 / 1e-122 RECA3 RECA homolog 3 (.1) AT2G19490 276 / 3e-88 recA DNA recombination family protein (.1) AT1G79050 166 / 4e-46 recA DNA recombination family protein (.1.2) AT3G32920 154 / 7e-44 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042033 [exp] 635 / 0 AT3G10140 378 / 4e-130 RECA homolog 3 (.1) Lus10017151 [exp] 270 / 6e-86 AT2G19490 538 / 0.0 recA DNA recombination family protein (.1) Lus10021585 [exp] 270 / 6e-86 AT2G19490 545 / 0.0 recA DNA recombination family protein (.1) Lus10042462 [exp] 163 / 6e-45 AT1G79050 637 / 0.0 recA DNA recombination family protein (.1.2) Lus10026204 [exp] 162 / 6e-45 AT1G79050 642 / 0.0 recA DNA recombination family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G057700 [exp] 420 / 4e-145 AT3G10140 423 / 2e-147 RECA homolog 3 (.1) Potri.006G048000 [exp] 412 / 8e-142 AT3G10140 427 / 5e-149 RECA homolog 3 (.1) Potri.018G067900 [exp] 286 / 4e-92 AT2G19490 547 / 0.0 recA DNA recombination family protein (.1) Potri.006G148700 [exp] 279 / 2e-89 AT2G19490 535 / 0.0 recA DNA recombination family protein (.1) Potri.001G438900 [exp] 153 / 2e-41 AT1G79050 609 / 0.0 recA DNA recombination family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00154 [flax] [poplar] RecA recA bacterial DNA recombination protein
Representative CDS sequence Show only first row Show all	>Lus10018037 pacid=23147865 polypeptide=Lus10018037 locus=Lus10018037.g ID=Lus10018037.BGIv1.0 annot-version=v1.0 ATGGTCGGCCTAATCAGAAAACTTCAACTTCCATCTGTAAAATTGAGGATTTCTCCAGTTCTATTATCCAGCAGTAGGTTATTTATTCCAGAGTTGATAA AAACAGAAGGGGAAGAATGGAAATCATACCTCAAAGCGAGCGATTGCGCCAATTATCCTGAAGAGCTTGGGATGCTTCTCCGCTTTTCTTCGCAATCAAA CTCGCGTACAGTTTGCTTTGCTAAGTTACCAACGCTGCTCCAACCTTCAATAACTCGGCGGCTGGATACTGTGAGACGAGGACACCTGAATGGAAGACCA TATTTGATTTCTGGCTTTCGTCGGAGCGCTCCCGCCAATTATTGCTCCCTAGCTGGAGTACCGGATTTTGAATTTGATGGAGTCCCGGATGATGGAAAAG CAGCAAAAAAGGATTATGCTCTTCGTCTGGCTCTTTCGCAGCTCGATAGTGAAACTGGCGGAGAGTCTATGTCGTTCCTACAGCGGTTTTTCGGTTCACG GAATGCACCTGTGGTTTCTACAGGCTCATTAAGGCTGGACCTAGCACTTGGCAATGGAGGATTGCCCAAGGGAAGAATGGTTGAGATATACGGGCAGGAA TCTTCTGGAAAGACAACACTTGCACTTCACATTATCAAGGAAGCTCAAAAGCGCGGAGGGTATTGCGCTTATCTTGATGTAGATAATACACTGGATAGTT CGCTTGTCGAAGCAATAGGTGTCAACACAGATAATCTACTTATTTCGCCTCCAGATTCTGCCGAAAACATGCTCAGTATGGTTAATACTTTGACCAAAAG CGGTTCTGTAGATGTTATTGTTGTTGACAGTGTTGCTGCACTTATCCCTCAACGTGAAATCAACGGCATGATAGGAAGCTATGATGGAGATATACAGTCT CGCATTATGAATCAAGCATTAAGAAGAATTCATTATTCTTTGTGCCAATCTCAAACTCTTCTCGTTTTTATCAATCAGGTCGGAAATCATACGGTTAGAT CAAGTGTCGGATCTGAACGGTGTCTCCCAAATGCAGAAGAGGCAACTTGTGCAGGAAAAACCTTGAAATTCTATTCAGCAGTGAGATTGAAAATGCGCAG GAAAAAGCTGCTGAAGACTGATGACAGGGTAACAGGACTCGGAGTTTGTGCTGAAGTGGTGAAAAACAAGCTGGGACCTGCAATGAAAACAGCAGAACTG GAAATAGAGTTTGGGAGAGGCTTTTGCCGTCAGTCTGAGGTATTGGAATTGGGTACTGAATATGGACTCATCACAAAAGAAGGATCCAGCTACATCATCA AAGGCCGAGTCTTTGATGGCGAGTTGGCAGCTCGGAAGCATCTGGCCAAACAGAATGGTGTCCTCGATGAGATCGTTGCGAACTTAAGGAGCCATTTGTT TCCAGAGGTAGACAGATGA
AA sequence Show only first row Show all	>Lus10018037 pacid=23147865 polypeptide=Lus10018037 locus=Lus10018037.g ID=Lus10018037.BGIv1.0 annot-version=v1.0 MVGLIRKLQLPSVKLRISPVLLSSSRLFIPELIKTEGEEWKSYLKASDCANYPEELGMLLRFSSQSNSRTVCFAKLPTLLQPSITRRLDTVRRGHLNGRP YLISGFRRSAPANYCSLAGVPDFEFDGVPDDGKAAKKDYALRLALSQLDSETGGESMSFLQRFFGSRNAPVVSTGSLRLDLALGNGGLPKGRMVEIYGQE SSGKTTLALHIIKEAQKRGGYCAYLDVDNTLDSSLVEAIGVNTDNLLISPPDSAENMLSMVNTLTKSGSVDVIVVDSVAALIPQREINGMIGSYDGDIQS RIMNQALRRIHYSLCQSQTLLVFINQVGNHTVRSSVGSERCLPNAEEATCAGKTLKFYSAVRLKMRRKKLLKTDDRVTGLGVCAEVVKNKLGPAMKTAEL EIEFGRGFCRQSEVLELGTEYGLITKEGSSYIIKGRVFDGELAARKHLAKQNGVLDEIVANLRSHLFPEVDR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10018037 [exp]	0	1
AT5G55280		ATFTSZ1-1, CPFT...	CHLOROPLAST FTSZ, ARABIDOPSIS ...		Lus10016579 [exp]	3.5	0.9150
AT1G76120			Pseudouridine synthase family ...		Lus10021231 [exp]	4.4	0.8887
AT1G75130		CYP721A1	"cytochrome P450, family 721, ...		Lus10010802 [exp]	4.8	0.8872
AT3G10140		RECA3	RECA homolog 3 (.1)		Lus10042033 [exp]	5.2	0.8815
AT3G10690		GYRA	DNA GYRASE A (.1)		Lus10008940 [exp]	5.3	0.9152
AT5G23310		FSD3	Fe superoxide dismutase 3 (.1)		Lus10017378 [exp]	6.2	0.9095
AT1G14410		WHY1, ATWHY1, P...	A. THALIANA WHIRLY 1, ssDNA-bi...		Lus10037206 [exp]	6.7	0.9012
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	10.6	0.8808
AT5G15640			Mitochondrial substrate carrie...		Lus10041498 [exp]	12.0	0.8335
AT5G43960			Nuclear transport factor 2 (NT...		Lus10023722 [exp]	12.2	0.9078

Compare expression of checked genes

Lus10018037 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.