Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04000 103 / 2e-29 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042034 [exp] 226 / 7e-77 AT5G04000 102 / 2e-28 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G047800 [exp] 117 / 2e-34 AT5G04000 105 / 5e-30 unknown protein Potri.016G044001 [exp] 110 / 5e-31 AT5G04000 99 / 2e-26 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10018038 pacid=23147939 polypeptide=Lus10018038 locus=Lus10018038.g ID=Lus10018038.BGIv1.0 annot-version=v1.0 ATGTATCGGAAATTACATGTTTCAGATGTGGATACGACGGGTAAGACAACAAGACCGACTGAATCAAACATCCCCAGGAACGACACAAAACAAGCTTCCC CTAAACGTAACGTGCAATTCAAAAGTTGGGGACACAAGGCTGGAGATGTCGTAAATAGTAATGCGGAAGATGATGATGGACGTTCGTACGGAGATGTAAA CATGGAGGCTTCTATATCAATGGAGGATGTAATGCGTGCTGGAGGCTTTGGAGCTAGAGATGACATTGGCAGTGTTCTTCCTGTTGCGAGTGATTCAACA GACTTCGAGGCTATGATTCTTGATGCTAAGGACTACGAAGAGCCACAGCTGGAATCACGAAGGCCAGGTCTTGGCTGGACTGATTCAGCAGCAGAAAGCA CCTCTTCTGATCGTCCTTAA
AA sequence Show only first row Show all	>Lus10018038 pacid=23147939 polypeptide=Lus10018038 locus=Lus10018038.g ID=Lus10018038.BGIv1.0 annot-version=v1.0 MYRKLHVSDVDTTGKTTRPTESNIPRNDTKQASPKRNVQFKSWGHKAGDVVNSNAEDDDGRSYGDVNMEASISMEDVMRAGGFGARDDIGSVLPVASDST DFEAMILDAKDYEEPQLESRRPGLGWTDSAAESTSSDRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04000			unknown protein		Lus10018038 [exp]	0	1
AT4G25270		OTP70	organelle transcript processin...		Lus10031714 [exp]	1.7	0.8625
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10017291 [exp]	2.0	0.8465
AT5G47630		MTACP3	mitochondrial acyl carrier pro...		Lus10038782 [exp]	5.3	0.7745
AT3G13845			unknown protein		Lus10015617 [exp]	6.0	0.8029
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10002865 [exp]	6.9	0.8303
AT5G01600		ATFER1	ARABIDOPSIS THALIANA FERRETIN ...		Lus10022673 [exp]	7.5	0.8304
AT3G58090			Disease resistance-responsive ...		Lus10009074 [exp]	8.8	0.8095
AT5G55640			unknown protein		Lus10043162 [exp]	8.9	0.7919
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10043207 [exp]	9.2	0.8250
AT4G18372			Small nuclear ribonucleoprotei...		Lus10000241 [exp]	10.4	0.7754

Compare expression of checked genes

Lus10018038 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.