Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41510 434 / 8e-150 ATCKX1, CKX1 cytokinin oxidase/dehydrogenase 1 (.1) AT3G63440 386 / 2e-131 ATCKX6, CKX6, ATCKX7 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) AT1G75450 305 / 7e-100 ATCKX6, ATCKX5, CKX5 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) AT5G21482 275 / 4e-88 ATCKX5, CKX7 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) AT4G29740 263 / 1e-84 ATCKX4, CKX4 cytokinin oxidase 4 (.1.2) AT2G19500 258 / 7e-82 ATCKX2, CKX2 cytokinin oxidase 2 (.1) AT5G56970 257 / 2e-81 ATCKX3, CKX3 cytokinin oxidase 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042035 [exp] 486 / 3e-172 AT2G41510 367 / 9e-123 cytokinin oxidase/dehydrogenase 1 (.1) Lus10031046 [exp] 456 / 1e-160 AT2G41510 423 / 1e-144 cytokinin oxidase/dehydrogenase 1 (.1) Lus10035433 [exp] 447 / 3e-158 AT2G41510 424 / 8e-146 cytokinin oxidase/dehydrogenase 1 (.1) Lus10005317 [exp] 432 / 3e-151 AT3G63440 536 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10039574 [exp] 432 / 5e-150 AT3G63440 544 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10016363 [exp] 428 / 6e-150 AT3G63440 483 / 9e-169 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Lus10003845 [exp] 301 / 8e-100 AT1G75450 578 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10024289 [exp] 303 / 8e-99 AT1G75450 717 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Lus10026471 [exp] 286 / 3e-92 AT5G21482 655 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G044100 [exp] 436 / 9e-151 AT2G41510 752 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.006G047900 [exp] 432 / 2e-149 AT2G41510 772 / 0.0 cytokinin oxidase/dehydrogenase 1 (.1) Potri.003G203600 [exp] 424 / 1e-146 AT3G63440 799 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.001G020900 [exp] 420 / 1e-144 AT3G63440 800 / 0.0 CYTOKININ OXIDASE 6, cytokinin oxidase/dehydrogenase 6 (.1) Potri.002G030500 [exp] 308 / 8e-101 AT1G75450 785 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.005G232300 [exp] 303 / 5e-99 AT1G75450 802 / 0.0 CYTOKININ OXIDASE 6, ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 5 (.1.2) Potri.006G152500 [exp] 275 / 3e-88 AT5G56970 603 / 0.0 cytokinin oxidase 3 (.1) Potri.006G221000 [exp] 260 / 1e-82 AT5G21482 674 / 0.0 ARABIDOPSIS THALIANA CYTOKININ OXIDASE 5, cytokinin oxidase 7 (.1) Potri.007G066100 [exp] 234 / 2e-72 AT5G56970 500 / 3e-173 cytokinin oxidase 3 (.1) Potri.016G064800 [exp] 43 / 0.0003 AT5G06580 885 / 0.0 FAD-linked oxidases family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF09265 [flax] [poplar] Cytokin-bind Cytokinin dehydrogenase 1, FAD and cytokinin binding
Representative CDS sequence Show only first row Show all	>Lus10018039 pacid=23147920 polypeptide=Lus10018039 locus=Lus10018039.g ID=Lus10018039.BGIv1.0 annot-version=v1.0 ATGGCATTACACCACCAAATGTTTCTCATCATGATCATGTTGCTATGCGGCCACATCCCTCACGAATCCAAGCCATGCAATATCCACCACCAAACCGATC ACAACACCATCACTGCTTCCTTGGAGACACTAAATCTAGATGGGTACTTCGAATTCGACGACTGGAACACAGCACTCGCAGCCAGGGATTTCGGCAACAG ATTCCATTTTCCGCCGCTGGGTGTCTTGCATCCCAAGTCTGTCTTCGACATCGCGACCACTGTCAGACACGTGTTCCATACTGGTGGTTTGGGTGACGTC ACCGTTGCGGCGAGAGGCCACGGCCACTCGCTGCAGGGGCAGGCTCAGGCTCACGGTGGGATAGTTATCAACATGGAATCGCTGAATCCGTGGCCGATGA GGATTATTGTTAGGAAGGGGGAATATGATGATTACGTGGTGGAAGTGTCGGGAGGGGAGCTGTGGATTGATGTTCTGCGTGAGACGCTTAAGTATGGATT GGCGCCCAACTCGTGGACGGATTACTTGCATCTTACGGTAGGAGGGACGCTGTCCAACGGCGGAATCAGTGGTCAAGCCTTCCGGCATGGCCCTCAGATC AATAACGTTCACCATTTGGAGGTTGTCACAGGTAAGGGAGATGTAATGAACTGTTCAGAGAAGGAAAACCCCGAGCTTTTTTTCGGTGTGCTTGGAGGAC TCGCACAGTTCGGGATCATCACTCGAGCCACCATCACTCTAGAACCAGCACCGTCCATGGTGAAATGGATCCGAGTTCTCTACTCCGATTTCTCCAAGTT CTCCCGAGACCAAGAACTTCTGATATCAATGGAACAAACTTTCGACTACATCGAAGGGTTCGTGGTGATAAACTCAACTGGCCTTCTCAATAACTGGAGA TCCTCTTTCCATCCAAAAGATCCTGTTCATGCCACCCAGTTCATTTCCGATGCCAAAACCCTCTACTGCCTTGAAGTTGCCAAGTATTACAATCCCAACA ACGACGAGACCGAAGTCACCGACATGGTAAAGTTCATTCTCCGCCAGTATAAAAGACACAGAAGCAACTTCTAA
AA sequence Show only first row Show all	>Lus10018039 pacid=23147920 polypeptide=Lus10018039 locus=Lus10018039.g ID=Lus10018039.BGIv1.0 annot-version=v1.0 MALHHQMFLIMIMLLCGHIPHESKPCNIHHQTDHNTITASLETLNLDGYFEFDDWNTALAARDFGNRFHFPPLGVLHPKSVFDIATTVRHVFHTGGLGDV TVAARGHGHSLQGQAQAHGGIVINMESLNPWPMRIIVRKGEYDDYVVEVSGGELWIDVLRETLKYGLAPNSWTDYLHLTVGGTLSNGGISGQAFRHGPQI NNVHHLEVVTGKGDVMNCSEKENPELFFGVLGGLAQFGIITRATITLEPAPSMVKWIRVLYSDFSKFSRDQELLISMEQTFDYIEGFVVINSTGLLNNWR SSFHPKDPVHATQFISDAKTLYCLEVAKYYNPNNDETEVTDMVKFILRQYKRHRSNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41510		ATCKX1, CKX1	cytokinin oxidase/dehydrogenas...		Lus10018039 [exp]	0	1
AT5G38710			Methylenetetrahydrofolate redu...		Lus10034095 [exp]	8.7	0.7895
AT4G17030		ATHEXPBETA3.1, ...	expansin-like B1 (.1)		Lus10000958 [exp]	31.9	0.7793
AT3G54000			unknown protein		Lus10016465 [exp]	44.7	0.7215
AT5G05970		NEDD1	NEURAL PRECURSOR CELL EXPRESSE...		Lus10040260 [exp]	46.0	0.7610
AT5G67265			unknown protein		Lus10042633 [exp]	51.5	0.7623
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Lus10029873 [exp]	54.1	0.7168
AT2G39510			nodulin MtN21 /EamA-like trans...		Lus10005964 [exp]	67.4	0.7555
AT1G62760			Plant invertase/pectin methyle...		Lus10024595 [exp]	69.8	0.7505
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Lus10003093 [exp]	89.2	0.7176
					Lus10013906 [exp]	111.7	0.7177

Compare expression of checked genes

Lus10018039 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.