Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G07330 117 / 1e-33 unknown protein AT1G63060 75 / 2e-17 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042036 [exp] 341 / 6e-122 AT5G07330 118 / 3e-34 unknown protein Lus10001796 [exp] 73 / 3e-17 AT1G63060 87 / 2e-23 unknown protein Lus10002567 [exp] 73 / 4e-17 AT1G63060 89 / 3e-24 unknown protein Lus10000001 [exp] 61 / 6e-13 AT1G63060 71 / 1e-17 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G109100 [exp] 155 / 6e-49 AT5G07330 133 / 3e-40 unknown protein Potri.012G111000 [exp] 155 / 1e-48 AT5G07330 130 / 4e-39 unknown protein Potri.003G160700 [exp] 97 / 5e-26 AT1G63060 114 / 4e-33 unknown protein Potri.012G110900 [exp] 96 / 2e-25 AT5G07330 81 / 5e-20 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06522 [flax] [poplar] B12D NADH-ubiquinone reductase complex 1 MLRQ subunit
Representative CDS sequence Show only first row Show all	>Lus10018040 pacid=23147899 polypeptide=Lus10018040 locus=Lus10018040.g ID=Lus10018040.BGIv1.0 annot-version=v1.0 ATGGCAGCTCTGAGATCAACGGGCATTTGGAAATCTGCAGTGAGTTCTCTCAGGGGAAATCACGCAAACACATACGCTACATCAAAAGTAACCAAGATGA AATCGTACACCTCTACTGCCGCAGCCGCCGACCAATCACGCAAGGATTCGGCGTCCAGGTGGTGGCCGCCGAGGAGGGATTACATTCCTGTGTACGTGGT GCTGGGGTTTATAGTGATGGCGACGTCTATGGGGGTTCACACCTTGACGCACCAGATCCGTCACAACCCGTCGGTAAGGGTGAAGAAGAAGGAAAGGGAG ACGATGCCGGAGGTTGTGGAGCCGGACAAAGTGGAGGACCAGTCTCACAAGTTTCTGGAGAATTCATGGTTCAGGAAAGTGGCGCATGTTCAGGAGTTCA ATAGCGGGATCCAGAACTCGCCTGATACGAATACTGGCGATGTGTATGCCCATCCTCCGCGGAAGGAATCGCTCAAGTCCGTCGGAGTCGATCCTAAGCA GCAAGCAAGCCAGCCAGCAGGAAGATAG
AA sequence Show only first row Show all	>Lus10018040 pacid=23147899 polypeptide=Lus10018040 locus=Lus10018040.g ID=Lus10018040.BGIv1.0 annot-version=v1.0 MAALRSTGIWKSAVSSLRGNHANTYATSKVTKMKSYTSTAAAADQSRKDSASRWWPPRRDYIPVYVVLGFIVMATSMGVHTLTHQIRHNPSVRVKKKERE TMPEVVEPDKVEDQSHKFLENSWFRKVAHVQEFNSGIQNSPDTNTGDVYAHPPRKESLKSVGVDPKQQASQPAGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G07330			unknown protein		Lus10018040 [exp]	0	1
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10041207 [exp]	3.0	0.9366
AT3G21740		APO4	ACCUMULATION OF PHOTOSYSTEM ON...		Lus10039659 [exp]	3.9	0.8729
AT5G49910		CPHSC70-2EATSHO...	HEAT SHOCK PROTEIN 70-7, chlor...		Lus10037357 [exp]	7.3	0.9270
AT1G07400			HSP20-like chaperones superfam...		Lus10016456 [exp]	8.5	0.9210
AT3G13130			unknown protein		Lus10038793 [exp]	8.7	0.9126
AT4G04950		AtGRXS17	Arabidopsis thaliana monothiol...		Lus10011187 [exp]	9.3	0.8309
AT1G16030		HSP70B	heat shock protein 70B (.1)		Lus10026100 [exp]	9.8	0.9146
AT4G27670		HSP21	heat shock protein 21 (.1)		Lus10022322 [exp]	10.2	0.9050
AT4G27940		ATMTM1	ARABIDOPSIS MANGANESE TRACKING...		Lus10014940 [exp]	13.3	0.8140
AT3G28857	bHLH	PRE5	Paclobutrazol Resistance 5, ba...		Lus10008626 [exp]	13.4	0.8139

Compare expression of checked genes

Lus10018040 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.