Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04170 289 / 1e-95 Calcium-binding EF-hand family protein (.1) AT3G10300 285 / 2e-94 Calcium-binding EF-hand family protein (.1.2.3.4.5) AT2G27480 153 / 2e-44 Calcium-binding EF-hand family protein (.1) AT2G41530 62 / 9e-11 ATSFGH ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) AT4G37010 45 / 2e-05 CEN2 centrin 2 (.1.2) AT3G50360 43 / 0.0001 CEN1, ATCEN2 CENTRIN 1, centrin2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042037 [exp] 380 / 2e-131 AT3G10300 350 / 1e-120 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10035435 [exp] 321 / 1e-108 AT3G10300 365 / 5e-127 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10031049 [exp] 277 / 1e-93 AT3G10300 289 / 2e-99 Calcium-binding EF-hand family protein (.1.2.3.4.5) Lus10043389 [exp] 193 / 1e-59 AT2G27480 238 / 1e-79 Calcium-binding EF-hand family protein (.1) Lus10019545 [exp] 188 / 5e-58 AT2G27480 232 / 3e-77 Calcium-binding EF-hand family protein (.1) Lus10031051 [exp] 80 / 1e-16 AT2G41530 473 / 9e-171 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) Lus10042038 [exp] 80 / 1e-16 AT2G41530 478 / 2e-172 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) Lus10035437 [exp] 78 / 6e-16 AT2G41530 433 / 6e-155 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) Lus10019349 [exp] 43 / 0.0003 AT4G37000 289 / 4e-94 ARABIDOPSIS THALIANA RED CHLOROPHYLL CATABOLITE REDUCTASE, accelerated cell death 2 (ACD2) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043600 [exp] 308 / 1e-103 AT3G10300 306 / 8e-104 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.006G047300 [exp] 299 / 2e-100 AT3G10300 334 / 5e-115 Calcium-binding EF-hand family protein (.1.2.3.4.5) Potri.009G163600 [exp] 186 / 7e-57 AT2G27480 229 / 6e-76 Calcium-binding EF-hand family protein (.1) Potri.004G202200 [exp] 186 / 9e-57 AT2G27480 232 / 9e-77 Calcium-binding EF-hand family protein (.1) Potri.006G047000 [exp] 80 / 8e-17 AT2G41530 442 / 2e-158 ARABIDOPSIS THALIANA S-FORMYLGLUTATHIONE HYDROLASE, S-formylglutathione hydrolase (.1) Potri.016G117200 [exp] 45 / 7e-05 AT3G51850 982 / 0.0 calcium-dependent protein kinase 13 (.1) Potri.005G138000 [exp] 42 / 0.0001 AT3G50360 275 / 4e-96 CENTRIN 1, centrin2 (.1) Potri.010G080900 [exp] 41 / 0.0004 AT4G14640 270 / 2e-94 calmodulin-like 8, calmodulin 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0220 [flax] [poplar] EF_hand PF00036 [flax] [poplar] EF-hand_1 EF hand
Representative CDS sequence Show only first row Show all	>Lus10018041 pacid=23147998 polypeptide=Lus10018041 locus=Lus10018041.g ID=Lus10018041.BGIv1.0 annot-version=v1.0 ATGGAGACGAAGCCGAGTGAGATTAGCAGTTCGAAGATGTTCGGAGGATACAACAGGAGATACAAGCATTTCAACCCAACTCCGGGCTGCTCCATGACTT TCCATGTCTATTTCCCGAACCAGACGAGCAGCATTCCAGCACCCAAATTCATTTCCCATGTCCGGATACCCTTATCATCCTCCTCCCGGTTACAGCTACG GCGGTGGGGTCTCTCACCACNNNNNNNNNNNNNNNNNNNNNGCGGTCCTCCACCGCCACAACCCTACGGATCCTCCGCCCCTCCTCAATCTCAACAGTAC GGATCCTCCGCCCCTCCGCAATCCCAACAGTACGGATCCTCCGCCCATTCGCAATCCCAACAGTACGGAGCATCTGCCCCTCCACCTCCACAACAGTACG GATCCTCCGCCCAGCAGTACGGGTCCGCTCCTTCGTATAGCTCCCCTCCGCATCAGCAGCCCCACGGTGTACCCTCTGCTCCATACGGCGCACAATATGG AGCCCTTGCGGGCAGCAATAAGCCATCGAAGGAGAATCCATACGGTGCGTCTGCTCCGGGAGGAGGAGGGAGCGGTTATCCTCCGTCAGGGCCTTACGGA AGCCCTTTCGCTTCTTTGTTGCCGTCGGCGTTTCCTCCAGGGACCGATCCCAGCATCGTAGCGTGCTTCCAGATCGCCGATCAAGACGGGAGCGGTTTCA TCGACGATAAGGAGCTCCAGAGAGCGCTTTCTGGCTACAATCAGAGCTTCAGCTTGAGGACTGTTCGCTTGCTGATGAACCACTTCACCAACACCAGCAC AATGAAGATCGGACCAAAGGACTTCACTCAAGTGTTTTACAGCCTTCAGAACTGGAGGGGGATTTTCGAGAGATTCGATAGGGATAGGAGCGGGAAGATT GATGCTAATGAGCTGAGAGAAGCGTTGTTAAGTCTGGGATTTTCAGTCTCTCCGGTTGTTCTGGACTTGCTGGTGTCTAAGTTTGATAAAACCGGTGGCA AGAACAATGCCATTGAGTATGACAATTTCATCGAATGCTGTCTTACCGTCAAGGGACTGACAGAGAAGTTTAAGGAGAAGGACACAGCATACACCGGTTC AGCAACTTTCACCTATGAAGCTTTCATGCTCACTGTTCTCCCCTTCCTTGTCGCATAA
AA sequence Show only first row Show all	>Lus10018041 pacid=23147998 polypeptide=Lus10018041 locus=Lus10018041.g ID=Lus10018041.BGIv1.0 annot-version=v1.0 METKPSEISSSKMFGGYNRRYKHFNPTPGCSMTFHVYFPNQTSSIPAPKFISHVRIPLSSSSRLQLRRWGLSPXXXXXXXXGPPPPQPYGSSAPPQSQQY GSSAPPQSQQYGSSAHSQSQQYGASAPPPPQQYGSSAQQYGSAPSYSSPPHQQPHGVPSAPYGAQYGALAGSNKPSKENPYGASAPGGGGSGYPPSGPYG SPFASLLPSAFPPGTDPSIVACFQIADQDGSGFIDDKELQRALSGYNQSFSLRTVRLLMNHFTNTSTMKIGPKDFTQVFYSLQNWRGIFERFDRDRSGKI DANELREALLSLGFSVSPVVLDLLVSKFDKTGGKNNAIEYDNFIECCLTVKGLTEKFKEKDTAYTGSATFTYEAFMLTVLPFLVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10300			Calcium-binding EF-hand family...		Lus10018041 [exp]	0	1
AT4G17960			unknown protein		Lus10030960 [exp]	4.0	0.8278
AT1G01630			Sec14p-like phosphatidylinosit...		Lus10022428 [exp]	5.5	0.8180
AT3G10300			Calcium-binding EF-hand family...		Lus10042037 [exp]	6.3	0.8214
AT5G60620		GPAT9	glycerol-3-phosphate acyltrans...		Lus10014443 [exp]	6.5	0.8284
AT4G22220		ATISU1, ISU1	SufE/NifU family protein (.1)		Lus10002383 [exp]	6.9	0.8330
AT1G14345			NAD(P)-linked oxidoreductase s...		Lus10036729 [exp]	9.1	0.8426
AT1G29690		CAD1	constitutively activated cell ...		Lus10025153 [exp]	9.7	0.8264
AT4G00550		DGD2	digalactosyl diacylglycerol de...		Lus10040927 [exp]	9.9	0.8048
AT3G24040			Core-2/I-branching beta-1,6-N-...		Lus10011765 [exp]	12.4	0.8005
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Lus10041396 [exp]	14.5	0.8099

Compare expression of checked genes

Lus10018041 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.