Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G26690 687 / 0 GDPDL3, GPDL2, MRH5, SHV3 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) AT5G55480 686 / 0 GPDL1, GDPDL4, SVL1 glycerophosphodiesterase-like 1, Glycerophosphodiester phosphodiesterase \(GDPD\) like 4, SHV3-like 1 (.1) AT1G66970 660 / 0 GDPDL1, SVL2 Glycerophosphodiester phosphodiesterase \(GDPD\) like 1, SHV3-like 2 (.1.2) AT1G66980 632 / 0 GDPDL2, SNC4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) AT3G20520 553 / 0 GDPDL5, SVL3 Glycerophosphodiester phosphodiesterase \(GDPD\) like 5, SHV3-like 3 (.1) AT5G58170 521 / 4e-176 GDPDL7, SVL5 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) AT5G58050 520 / 2e-175 GDPDL6, SVL4 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) AT1G74210 86 / 8e-18 AtGDPD5 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1) AT5G08030 80 / 7e-16 AtGDPD6 glycerophosphodiester phosphodiesterase 6, PLC-like phosphodiesterases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014903 [exp] 1098 / 0 AT4G26690 833 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10031604 [exp] 1065 / 0 AT4G26690 817 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10016584 [exp] 1049 / 0 AT4G26690 801 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10032576 [exp] 965 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10043171 [exp] 827 / 0 AT4G26690 665 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Lus10019605 [exp] 416 / 5e-135 AT5G58170 670 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040036 [exp] 370 / 4e-119 AT5G58170 520 / 6e-177 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Lus10040037 [exp] 336 / 5e-104 AT1G66980 580 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 2, suppressor of npr1-1 constitutive 4 (.1) Lus10019606 [exp] 325 / 3e-101 AT5G58170 454 / 9e-151 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G360800 [exp] 773 / 0 AT4G26690 850 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.001G360700 [exp] 767 / 0 AT4G26690 835 / 0.0 SHAVEN 3, MUTANT ROOT HAIR 5, GLYCEROPHOSPHODIESTERASE-LIKE 2, Glycerophosphodiester phosphodiesterase \(GDPD\) like 3, PLC-like phosphodiesterase family protein (.1) Potri.018G110600 [exp] 518 / 2e-174 AT5G58050 870 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 6, SHV3-like 4 (.1) Potri.006G187600 [exp] 504 / 2e-169 AT5G58170 893 / 0.0 Glycerophosphodiester phosphodiesterase \(GDPD\) like 7, SHV3-like 5 (.1) Potri.015G058400 [exp] 76 / 3e-14 AT1G74210 611 / 0.0 glycerophosphodiester phosphodiesterase 5, PLC-like phosphodiesterases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0384 [flax] [poplar] PLC PF03009 [flax] [poplar] GDPD Glycerophosphoryl diester phosphodiesterase family
Representative CDS sequence Show only first row Show all	>Lus10018042 pacid=23147876 polypeptide=Lus10018042 locus=Lus10018042.g ID=Lus10018042.BGIv1.0 annot-version=v1.0 ATGTCTGCTCTGATTACTGCCTCTCTTGGTCTGCTCCTCCCTCTTCTGCTTCACTCCTTTCCAGCTTATTCCGTCTCTGCTCACCAGGGAACTACTCTTC TCTGGAACACTCTCTCCGGAAATTACCCCTTGGTCGTAGCTCGGGGTGGATTTTCAGCTATTGGGATTTGCCTTCCTGACCTCAAGCGTGATAATTCTAC TGATATCACCATGTTTTATAACAATAGCCGTCAGGTTTCCTACACTGTCAATGGCGTTAAGCAAGATGGATGGTTTCCATCCGATTTCACCTACAAGGAG CTGTCAGCTCTTTCCTTAAGGCAGGGAGTATACTCTCGCAGTCCAAAATTCGATACCAATTTATTCCCAATCCTTACTGTTGACGATGTTGCTAGATTCA AGCCTGCTGGTCTCTGGTTAAATGTTCAGCATGATACATTCTACAGACAGCAGAATCTGAGTATGAGAAGCTATGTTCTTGCTGCATCTAAAAGAGTGGT TATAAACTACATTTCTTCACCCGAAGTTGGGTTCTTCAGGAGTATTTCCAAACGATTCAATCCAAACATCACCAAACTGTTCTTCCGGTTCAACGGGGAG GATGAGATTGAGCCTACATTGAACCAGACTTATTTTTCTCTGCTGTCAAATTTAACATTCGTCAGGACATTTGCCTCTGGAATTATTGTCCCTAAGACTT ACATATGGCCTGTGGACGCACGTAATTATCTAACCTCCAGTAGGAGTCCTCTGAATGTCTTGGACGCGCACAAAGCCGGCCTCGAAGTTTTTGCCTCGGA CTTTTTCAACGACGCTATTCTGAGTTACAATTACAGTTATGATCCAGTATCTGAATATCTGAACTTTGTGGACAATGGTCAGTTCTCCGTTGATGGTGTG CTCTCTGACTACCCAATAACTCCATCTGCCGCATTTGATTGCTTCTCTCATCTTGGCCAGAATGCTTCAGAAAACGGCAAGTTTTTGGTCATCTCGAAAA ACGGTGCAAGTGGAGACTATCCTGGTTGTACCGATATTGCATACCGAACTGCTATCTCGGACGGTGCAGATGTTATCGATTGTCCAATCCAGATGTCTCA AGATGGAGTCCCATTCTGCCAAAGCTCTATAAATCTTTTAGAGACTACAAATGCTGCTGACATGTTGAATGTAGTTTCAACAAGTGTTCCGGAGCTCCTA GGCAATGGCGTATATTCCTTTAGTTTACCATGGACACAGATTCAGAATTTGGCTCCGGTCATATCCAGACCATATTCAAGCTATCAGTTGTACAGGAACC CGAAGATGCGAAATGCCGGGAAGTTGGTATCCCTAGCTGACTTCTTGGCATTGGCGAAGGACAATGCGAAATCTCTGTCTGGTGCATTAATTAAGATCGA GAACGCAGCATATCTGATGGCGAAGGAGGGGCTGGCTGTACTTGACGCGGTTGAGACCGAGTTGGAAAGAGCTGGTTATGGAAATGAGACAGTTCCGAAA GTGATGATTCAGTCCACCAACAGCTCAGTTCTAATGAAGCTGAGGGATAAGAAGAACAAGTACGAGCTGGTGTACCAGGTTGACGAGACAATTGGAAGTG CGGAGGCTTTAGCCATTAGAGACATGAAGGAATTTGCTGATTCTGTAATGATCAGCAAGACATCGGTGTTCCCTGTTAACAATTTTTATCTCACTGGAAT GACCGATGTTGTGTCGAGGCTCCAATCGGCTCAACTAGGTGTCTACGTGGAAACATTCAGCAATGAGTTTGCATCTCAACCATGGGACTTCTATGCAGAT GCTAATATGGAACTCAGCACCTATATCACCGGAACCAACATTACCGGTGTTGTTACAGACTTTCCCAAGACATCTGCCAGATTCAAAAGCAAGGATACCC CGGTTTACATATCCCCTGTTCACGCGGGCAGCCTGCTAGAAATAATTTTACCTCCATCGTTGCCGCCAGCTCAAGCTCCAAGCCCGACTCTAACTGAGAA CGATATCGCGGAGGTGCCTTTGCCGGCCATCAGAGACAAATCTACGACTCTGACTCCACCGGGTGCTAGAGCTACACCACCAAGTCCATCAAATGGGGAG CCAAAGGTGGGAGCTTGTTTAACATTGGTCAGACTGTTCGTTGTAGAATAG
AA sequence Show only first row Show all	>Lus10018042 pacid=23147876 polypeptide=Lus10018042 locus=Lus10018042.g ID=Lus10018042.BGIv1.0 annot-version=v1.0 MSALITASLGLLLPLLLHSFPAYSVSAHQGTTLLWNTLSGNYPLVVARGGFSAIGICLPDLKRDNSTDITMFYNNSRQVSYTVNGVKQDGWFPSDFTYKE LSALSLRQGVYSRSPKFDTNLFPILTVDDVARFKPAGLWLNVQHDTFYRQQNLSMRSYVLAASKRVVINYISSPEVGFFRSISKRFNPNITKLFFRFNGE DEIEPTLNQTYFSLLSNLTFVRTFASGIIVPKTYIWPVDARNYLTSSRSPLNVLDAHKAGLEVFASDFFNDAILSYNYSYDPVSEYLNFVDNGQFSVDGV LSDYPITPSAAFDCFSHLGQNASENGKFLVISKNGASGDYPGCTDIAYRTAISDGADVIDCPIQMSQDGVPFCQSSINLLETTNAADMLNVVSTSVPELL GNGVYSFSLPWTQIQNLAPVISRPYSSYQLYRNPKMRNAGKLVSLADFLALAKDNAKSLSGALIKIENAAYLMAKEGLAVLDAVETELERAGYGNETVPK VMIQSTNSSVLMKLRDKKNKYELVYQVDETIGSAEALAIRDMKEFADSVMISKTSVFPVNNFYLTGMTDVVSRLQSAQLGVYVETFSNEFASQPWDFYAD ANMELSTYITGTNITGVVTDFPKTSARFKSKDTPVYISPVHAGSLLEIILPPSLPPAQAPSPTLTENDIAEVPLPAIRDKSTTLTPPGARATPPSPSNGE PKVGACLTLVRLFVVE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55480		GPDL1, GDPDL4, ...	glycerophosphodiesterase-like ...		Lus10018042 [exp]	0	1
AT2G28500	AS2	LBD11	LOB domain-containing protein ...		Lus10036130 [exp]	1.0	0.9371
AT1G34050			Ankyrin repeat family protein ...		Lus10024844 [exp]	1.7	0.9298
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10035498 [exp]	2.0	0.9338
AT1G17050		SPS2	solanesyl diphosphate synthase...		Lus10042491 [exp]	3.2	0.9227
					Lus10021726 [exp]	3.5	0.9084
AT4G16950		RPP5	RECOGNITION OF PERONOSPORA PAR...		Lus10020525 [exp]	5.3	0.9191
AT3G02850		SKOR	STELAR K+ outward rectifier, S...		Lus10001999 [exp]	6.9	0.9262
AT5G28010			Polyketide cyclase/dehydrase a...		Lus10002175 [exp]	7.4	0.9119
AT3G56710		SIB1	sigma factor binding protein 1...		Lus10038985 [exp]	8.5	0.8895
					Lus10016134 [exp]	8.7	0.8892

Compare expression of checked genes

Lus10018042 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.