Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G41560 706 / 0 ACA4 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) AT3G57330 700 / 0 ACA11 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) AT4G37640 611 / 0 ACA2 calcium ATPase 2 (.1) AT1G27770 605 / 0 PEA1, ACA1 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) AT2G22950 595 / 0 ACA7 auto-regulated Ca2+-ATPase 7, Cation transporter/ E1-E2 ATPase family protein (.1) AT4G29900 493 / 5e-165 CIF1, ATACA10, ACA10 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) AT5G57110 488 / 7e-163 AT-ACA8, ACA8 "AUTOINHIBITED CA2+ -ATPASE, ISOFORM 8", "autoinhibited Ca2+ -ATPase, isoform 8", autoinhibited Ca2+ -ATPase, isoform 8 (.1), autoinhibited Ca2+ -ATPase, isoform 8 (.2) AT3G21180 459 / 8e-152 ATACA9, ACA9 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) AT3G63380 438 / 3e-144 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) AT3G22910 424 / 5e-139 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042040 [exp] 887 / 0 AT3G57330 1542 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Lus10035439 [exp] 820 / 0 AT2G41560 1535 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10031053 [exp] 767 / 0 AT2G41560 1480 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10019758 [exp] 669 / 0 AT2G41560 1007 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10016366 [exp] 664 / 0 AT2G41560 1463 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Lus10011522 [exp] 610 / 0 AT4G37640 1704 / 0.0 calcium ATPase 2 (.1) Lus10018687 [exp] 591 / 0 AT1G27770 1667 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Lus10025199 [exp] 571 / 0 AT4G37640 1591 / 0.0 calcium ATPase 2 (.1) Lus10007736 [exp] 544 / 0 AT1G27770 1528 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G043100 [exp] 761 / 0 AT2G41560 1538 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.006G046500 [exp] 735 / 0 AT3G57330 1451 / 0.0 autoinhibited Ca2+-ATPase 11, autoinhibited Ca2+-ATPase 11 (.1) Potri.001G020600 [exp] 693 / 0 AT2G41560 1455 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.003G204000 [exp] 659 / 0 AT2G41560 1398 / 0.0 "autoinhibited Ca\(2+\)-ATPase, isoform 4", autoinhibited Ca(2+)-ATPase, isoform 4 (.1) Potri.014G016600 [exp] 607 / 0 AT1G27770 1686 / 0.0 PLASTID ENVELOPE ATPASE 1, autoinhibited Ca2+-ATPase 1, autoinhibited Ca2+-ATPase 1 (.1), autoinhibited Ca2+-ATPase 1 (.2) Potri.007G055500 [exp] 601 / 0 AT4G37640 1721 / 0.0 calcium ATPase 2 (.1) Potri.005G052700 [exp] 473 / 9e-158 AT3G63380 1233 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1) Potri.018G139800 [exp] 474 / 2e-157 AT4G29900 1566 / 0.0 COMPACT INFLORESCENCE 1, autoinhibited Ca\(2+\)-ATPase 10, autoinhibited Ca(2+)-ATPase 10 (.1) Potri.010G250800 [exp] 466 / 2e-154 AT3G21180 1575 / 0.0 autoinhibited Ca\(2+\)-ATPase 9, autoinhibited Ca(2+)-ATPase 9 (.1) Potri.013G040201 [exp] 461 / 3e-153 AT3G63380 1198 / 0.0 ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00689 [flax] [poplar] Cation_ATPase_C Cation transporting ATPase, C-terminus CL0137 [flax] [poplar] HAD PF00702 [flax] [poplar] Hydrolase haloacid dehalogenase-like hydrolase
Representative CDS sequence Show only first row Show all	>Lus10018044 pacid=23147884 polypeptide=Lus10018044 locus=Lus10018044.g ID=Lus10018044.BGIv1.0 annot-version=v1.0 ATGTGCGATAGATTTGTCGACGAAAATGGAGAAGTAGCCGATTTATCAGAGGAACAGGTAAGCACTATATCGGACGGCCTAAATGACTTTGCTTGTGATG CACTGAGAACCCTTTGCCTGGCTTTCAAAGACCTAGATGATGGTACATCTGAACACACCAACATCCCTGATTCTGGCTACACGTTGGTTGCTGTTGTTGG AATTAAAGATCCAGTTCGTCCTGGAGTCAGGGAGGCAGTTCAGACCTGCTTAGCAGCTGGAATAACTGTCCGCATGGTTACTGGTGATAATATCAACACT GCTAGAGCCATAGCCAAAGAGTGTGGGATACTTACTGAGGATGGTGTGGCTATAGAAGGGCCTGAGTTCCGTAGCAAGACACCTGATGAAATGAGAGCCA TTATACCGAAAATTCAGGTAATGGCTAGATCGCTGCCGCTGGACAAACACACGCTAGTTACGAATCTGAAAAATATGTTCGGGGAAGTCGTCGTAGTTAC CGGTGATGGGACCAACGATGCCCCTGCTTTGCATGAGGCGGACATCGGACTTGCCATGGGCATAGCAGGAACTGAGGTTGCGAAAGAGAATGCCGATATC ATCATAATGGATGATAACTTCAAGAGCATTGTAAACGTTGCTAAATGGGGTCGTTCAGTGTACATAAACATCCAGAAGTTTGTACAGTTCCAGCTGACGG TTAACATTGTTGCACTAGTACTCAACTTCATTTCTGCTTGCATATCAGGGTCTGCTCCGCTAACAGCCGTGCAGCTGCTTTGGGTAAACATGATAATGGA CACCCTAGGAGCGTTGGCACTGGCAACTGAACCTCCGAATGACGCACTAATGCAGAGACTTCCAGTCGGTAGGGGTGCAAGCTTCATCACGAAAACAATG TGGAGGAATATATTTGGTCAGAGTATCTACCAACTGGCTGTTCTCGGAGTTCTCAATTTCGGCGGGAAGAAGATACTAGGACTGGAAGGTCCAGATGCTA CACTCACTCTGAATACTTTGATATTCAACTCTTTCGTTTTCTGCCAGGTATTCAACGAAATAAACAGCAGGGAAATAGAGAAGATCAACGTGTTGAAAGG TATGTTCAGCAGCTGGGTATTCATGGGGGTAATGGCGGTGACAGTCGTGTTCCAAGTAATCATCGTGGAATTCCTCGGAACATTTGCCAGCACTGTCTCG CTCAGCTGGGAAATGTGGCTTCTGAGCGTCGGATTAGGAGCGGTTAGCTTACCGATCGCCGTAGTATTGAAGTGCATCCCTGTAGGAGGAGATGATAATC AACCACAACCCAAGAAGAAGCAACACGACGGTTACGAACAACTCCCCAGCGGCCCTGACTTGGCTTGA
AA sequence Show only first row Show all	>Lus10018044 pacid=23147884 polypeptide=Lus10018044 locus=Lus10018044.g ID=Lus10018044.BGIv1.0 annot-version=v1.0 MCDRFVDENGEVADLSEEQVSTISDGLNDFACDALRTLCLAFKDLDDGTSEHTNIPDSGYTLVAVVGIKDPVRPGVREAVQTCLAAGITVRMVTGDNINT ARAIAKECGILTEDGVAIEGPEFRSKTPDEMRAIIPKIQVMARSLPLDKHTLVTNLKNMFGEVVVVTGDGTNDAPALHEADIGLAMGIAGTEVAKENADI IIMDDNFKSIVNVAKWGRSVYINIQKFVQFQLTVNIVALVLNFISACISGSAPLTAVQLLWVNMIMDTLGALALATEPPNDALMQRLPVGRGASFITKTM WRNIFGQSIYQLAVLGVLNFGGKKILGLEGPDATLTLNTLIFNSFVFCQVFNEINSREIEKINVLKGMFSSWVFMGVMAVTVVFQVIIVEFLGTFASTVS LSWEMWLLSVGLGAVSLPIAVVLKCIPVGGDDNQPQPKKKQHDGYEQLPSGPDLA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10018044 [exp]	0	1
AT3G57330		ACA11	autoinhibited Ca2+-ATPase 11, ...		Lus10018045 [exp]	7.3	0.8776
AT2G14095			unknown protein		Lus10001299 [exp]	9.1	0.9193
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10000611 [exp]	10.6	0.9235
AT1G25520			Uncharacterized protein family...		Lus10021697 [exp]	18.5	0.8773
AT4G38540			FAD/NAD(P)-binding oxidoreduct...		Lus10034467 [exp]	22.8	0.9120
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10035301 [exp]	27.3	0.8990
AT3G51440			Calcium-dependent phosphotries...		Lus10041827 [exp]	29.6	0.9058
AT5G18350			Disease resistance protein (TI...		Lus10018024 [exp]	30.0	0.8966
AT4G02340			alpha/beta-Hydrolases superfam...		Lus10011204 [exp]	30.2	0.9041
AT5G06839	bZIP	TGA10, bZIP65	TGACG \(TGA\) motif-binding pr...		Lus10023822 [exp]	33.4	0.9027

Compare expression of checked genes

Lus10018044 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.